View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19687_high_26 (Length: 367)
Name: NF19687_high_26
Description: NF19687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19687_high_26 |
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Alignment Details
Target: chr6 (Bit Score: 243; Significance: 1e-134; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 18 - 344
Target Start/End: Complemental strand, 5569951 - 5569614
Alignment:
| Q |
18 |
atgaaaatgttcattttgttgatgagcgtttgcagtttgagttagatttcaatcacaatgctccaactttgactcatgaaaatctatgaagcacgga--- |
114 |
Q |
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| T |
5569951 |
atgaaaatgttcattttgttgatgagcgtttgcagtttgagttagatttcaatcacaatgctccaactttgactcatgaaaatcgatgaagcacggacac |
5569852 |
T |
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| Q |
115 |
--------ttaagcgtgttcaggtgtccgtatcggtgtttgtgtcatgtccagtgtgtatccgtatccgtgcttcatagatgaaaactaattttgagagg |
206 |
Q |
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| T |
5569851 |
tcctcagattaggcgtgttcaggtgtctgtatcggtgtctgtgtcatgtccagtgtgtgtccgtatccgtgcttcatagatgaaaactaattttgacagg |
5569752 |
T |
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| Q |
207 |
ctaggttaagagtaattttagttggggactgggttatcatttttccttctaatttagagcatgtatagttagtattatcatttaattatttgatnnnnnn |
306 |
Q |
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| T |
5569751 |
ctaggttaagattaattttagttggggactgggttatcatttttccttctaatttagagcatgtatagttagtattatcatttaattatttgataaaaaa |
5569652 |
T |
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| Q |
307 |
nttgcaccccaatgatattgcgagtctaggtccacccc |
344 |
Q |
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| T |
5569651 |
attgtaccccaatgatattgtgagtctaggtccacccc |
5569614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 18 - 96
Target Start/End: Complemental strand, 2498154 - 2498074
Alignment:
| Q |
18 |
atgaaaatgttcattttgttgatgagcg--tttgcagtttgagttagatttcaatcacaatgctccaactttgactcatga |
96 |
Q |
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| T |
2498154 |
atgaaaatgttcattttgttgatgagagagtttgcagtttgagttggatttcaatcacaatgctcatactttgactcatga |
2498074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 18 - 96
Target Start/End: Complemental strand, 27100742 - 27100662
Alignment:
| Q |
18 |
atgaaaatgttcattttgttgatgagcg--tttgcagtttgagttagatttcaatcacaatgctccaactttgactcatga |
96 |
Q |
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|||||||||||||||||||||||||| | ||||||||||||||| ||||||||||||||||||| |||||||||||||| |
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| T |
27100742 |
atgaaaatgttcattttgttgatgagagagtttgcagtttgagttggatttcaatcacaatgctcatactttgactcatga |
27100662 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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