View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19687_high_39 (Length: 300)
Name: NF19687_high_39
Description: NF19687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19687_high_39 |
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Alignment Details
Target: chr8 (Bit Score: 162; Significance: 2e-86; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 24 - 283
Target Start/End: Original strand, 43348185 - 43348435
Alignment:
| Q |
24 |
tactcattcacatcaaacatatgaaccctaagctatggatatataatctactaacactgacaagccgacacctcacacctgtaataatttgaagagnnnn |
123 |
Q |
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| T |
43348185 |
tactcattcacatcaaacatatgaaccctaagctatggatatataatctactaacactgacaagccgacacctcacacctgtaataatttgaaga-aaaa |
43348283 |
T |
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| Q |
124 |
nnnntgacaaaattgaattcgaatttcgtaaatccaattacacataacattttacnnnnnnnnnnnnnnnnnntaatgaaacagaaagaaaggaagttat |
223 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
43348284 |
aaaatgacaaaattgaatttgaatttcgtaaatccaattacacataacattttacaataaaaaaaa--------aatgaaacagaaagaaaggaagttat |
43348375 |
T |
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| Q |
224 |
gaattgatacataagcaaatgccgatgatgatgagagcggtaccaaagaaagtgcgaggg |
283 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43348376 |
gaattgatacataagcaaatgccgatgatgatgagagcggtaccaaagaaagtgcgaggg |
43348435 |
T |
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