View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19687_high_46 (Length: 257)
Name: NF19687_high_46
Description: NF19687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19687_high_46 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 17 - 245
Target Start/End: Original strand, 8416499 - 8416727
Alignment:
| Q |
17 |
aaattcttaatccaaaacacctccccaagtataagggtgacctagcaaaacaaaagtataaatggtggtaaaagattttgttaaaatattgtattcccaa |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8416499 |
aaattcttaatccaaaacacctccccaagtataagggtgacctagcaaaacaaaagtataaatggtggtaaaagattttgttaaaatattgtattcccaa |
8416598 |
T |
|
| Q |
117 |
ttacgtatttacttatgaagtttttaagtataaaatgttaaaccatatggaagataatttattgaaaaattgattagtgacatgcatagtgagatatcta |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8416599 |
ttacgtatttacttatgaagtttttaagtataaaatgttaaaccatatggaagataatttattgaaaaattgattagtgacatgcatagtgagatatcta |
8416698 |
T |
|
| Q |
217 |
tatgnnnnnnnatttactaaccgaatatt |
245 |
Q |
| |
|
|||| |||||||||||||||||| |
|
|
| T |
8416699 |
tatgtttttttatttactaaccgaatatt |
8416727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University