View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19687_high_58 (Length: 245)
Name: NF19687_high_58
Description: NF19687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19687_high_58 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 96; Significance: 3e-47; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 130 - 229
Target Start/End: Complemental strand, 2901948 - 2901849
Alignment:
| Q |
130 |
atgattctaagatttgcatttacgtaattatcaacattttcaaatttgtataaataggtacacacatcactagtctagcatatcataacaaattaataac |
229 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
2901948 |
atgattctaagatttgcatttacgtaattatcaacattttcaaatttgtataaataggtacacacatcactagtctagcatatcataacaagttaataac |
2901849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 157 - 227
Target Start/End: Complemental strand, 2887975 - 2887907
Alignment:
| Q |
157 |
ttatcaacattttcaaatttgtataaataggtacacacatcactagtctagcatatcataacaaattaata |
227 |
Q |
| |
|
||||||||||||||||| ||| ||||||| | ||||| ||||||||||||||||| ||||||| |||||| |
|
|
| T |
2887975 |
ttatcaacattttcaaaattgcataaataag--cacacctcactagtctagcatatgataacaagttaata |
2887907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 227
Target Start/End: Complemental strand, 2889696 - 2889632
Alignment:
| Q |
161 |
caacattttcaaatttgtataaataggtacacacatcactagtctagcatatcataacaaattaata |
227 |
Q |
| |
|
||||||||||||| ||| ||||||| | ||||| ||||||||||||||||| ||||||| |||||| |
|
|
| T |
2889696 |
caacattttcaaaattggataaataag--cacacctcactagtctagcatatgataacaagttaata |
2889632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 193
Target Start/End: Complemental strand, 2813748 - 2813703
Alignment:
| Q |
147 |
atttacgtaattatcaacattttcaaatttgtataaataggtacaca |
193 |
Q |
| |
|
|||||||||||||||||| ||| |||||||||||||||| ||||||| |
|
|
| T |
2813748 |
atttacgtaattatcaac-tttgcaaatttgtataaataagtacaca |
2813703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 153 - 226
Target Start/End: Complemental strand, 14707706 - 14707635
Alignment:
| Q |
153 |
gtaattatcaacattttcaaatttgtataaataggtacacacatcactagtctagcatatcataacaaattaat |
226 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| || |||||||||||||||| ||||||||||||| ||||| |
|
|
| T |
14707706 |
gtaattatcaacattctcaaatttgtataaataagt--acacatcactagtctatcatatcataacaagttaat |
14707635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 157 - 228
Target Start/End: Complemental strand, 34502765 - 34502696
Alignment:
| Q |
157 |
ttatcaacattttcaaatttgtataaataggtacacacatcactagtctagcatatcataacaaattaataa |
228 |
Q |
| |
|
||||||||| ||||||||||||||||||| |||||||| |||||||| ||||||||||||||| ||||||| |
|
|
| T |
34502765 |
ttatcaacactttcaaatttgtataaataagtacacac--cactagtcaagcatatcataacaagttaataa |
34502696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 157 - 228
Target Start/End: Complemental strand, 27614176 - 27614108
Alignment:
| Q |
157 |
ttatcaacattttcaaatttgtataaataggtacacacatcactagtctagcatatcataacaaattaataa |
228 |
Q |
| |
|
||||||||| |||||||||||||||| || |||||||| |||||||| ||||||||||||||| ||||||| |
|
|
| T |
27614176 |
ttatcaacactttcaaatttgtataa-taagtacacac--cactagtcaagcatatcataacaagttaataa |
27614108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University