View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19687_high_7 (Length: 535)
Name: NF19687_high_7
Description: NF19687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19687_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 26390064 - 26389830
Alignment:
| Q |
1 |
agagttcatgaaatattccaatgtgacaaaaatatcctattataatgtgatattcgtgaaatatattcaacatcccttttgatgcttgggttatattgac |
100 |
Q |
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| T |
26390064 |
agagttcatgaaatattccaatgtgacaaaaatatcctattataatgtgatattcgtgaaatatattcaacatcccttttgatgcttgggttatattgac |
26389965 |
T |
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| Q |
101 |
tcttatgttggttcccttcatttgctctccgatttgttttgtgttgctttttgtagacttgcagaggaaatgaagcaaatgcattgaataagctttatgt |
200 |
Q |
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| T |
26389964 |
tcttatgttggttcccttcatttgctctccgatttgttttgtgttgctttttgtagacttgcagaggaaatgaagcaaatgcattgaataagctttatgt |
26389865 |
T |
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| Q |
201 |
aactttatgtttgtacgtctcctccacttcaaaat |
235 |
Q |
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| T |
26389864 |
aactttatgtttgtacgtctcctccacttcaaaat |
26389830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 319 - 445
Target Start/End: Complemental strand, 26389746 - 26389620
Alignment:
| Q |
319 |
agcttaatatgacctttaccctgctagagcatcagtgaacacgagccaatgacaaagcataattctgttttcattattgttttatttgcgtagaacataa |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26389746 |
agcttaatatgacctttaccctgctagagcatcagtgaacacgagccaatgacaaagcataattctgttttcattattgttttatttgcgtagaacataa |
26389647 |
T |
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| Q |
419 |
ttgacagctatcatatgagatgtgata |
445 |
Q |
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| T |
26389646 |
ttgacagctatcatatgagatgtgata |
26389620 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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