View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19687_high_70 (Length: 212)
Name: NF19687_high_70
Description: NF19687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19687_high_70 |
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Alignment Details
Target: chr3 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 17 - 196
Target Start/End: Complemental strand, 4840524 - 4840345
Alignment:
| Q |
17 |
atatgccatcatctcaacttctcacagaaccctctcatctccacccagaaattcttctcaatagaaccctaacccatcatctcatacaaattcattcact |
116 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4840524 |
atatgccatcatctcaacttctcactgaaccctctcatctccacccagaaattcttctcaatagaaccctaacccatcatctcatacaaattcattcact |
4840425 |
T |
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| Q |
117 |
ccaccctttgacgaaactgtcgaactaatagaagtcgttttctgcatgcttttccttctcactcgtacctgtaagtcttt |
196 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4840424 |
gcaccctttgacgaaactgtcgaactaatagaagtcgttttctgcatgcttttccttctcactcgtacctgtaagtcttt |
4840345 |
T |
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Target: chr6 (Bit Score: 164; Significance: 8e-88; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 17 - 196
Target Start/End: Complemental strand, 14360936 - 14360757
Alignment:
| Q |
17 |
atatgccatcatctcaacttctcacagaaccctctcatctccacccagaaattcttctcaatagaaccctaacccatcatctcatacaaattcattcact |
116 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14360936 |
atatgccatcatctcaacttctcactgaaccctctcatctccacccagaaattcttctcaatagaaccctaacccatcatctcatacaaattcattcact |
14360837 |
T |
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| Q |
117 |
ccaccctttgacgaaactgtcgaactaatagaagtcgttttctgcatgcttttccttctcactcgtacctgtaagtcttt |
196 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
14360836 |
gcaccctttgacgaaactgacgaactaatagaagtcgttttctgcacgcttttccttctcactcgtacctgtaagtcttt |
14360757 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 17 - 196
Target Start/End: Complemental strand, 13069772 - 13069593
Alignment:
| Q |
17 |
atatgccatcatctcaacttctcacagaaccctctcatctccacccagaaattcttctcaatagaaccctaacccatcatctcatacaaattcattcact |
116 |
Q |
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|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
13069772 |
atatgccatcatctcaacttctcactgaaccctctcatctccacccagaaattcttctcaatagaaccctaacccatcatctcatacgaattcattcact |
13069673 |
T |
|
| Q |
117 |
ccaccctttgacgaaactgtcgaactaatagaagtcgttttctgcatgcttttccttctcactcgtacctgtaagtcttt |
196 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
13069672 |
gcaccctttgatgaaactgtcgaactaatagaagtcgttttctgcacgcttttccttctcactcgtacctgtaagtcttt |
13069593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 17 - 196
Target Start/End: Original strand, 28157373 - 28157552
Alignment:
| Q |
17 |
atatgccatcatctcaacttctcacagaaccctctcatctccacccagaaattcttctcaatagaaccctaacccatcatctcatacaaattcattcact |
116 |
Q |
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||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
28157373 |
atatgtcatcatctcaacttctcactgaaccctctcatctccacccagaaattcttctcaatagaaccctaacccatcatctcatacgaattcattcact |
28157472 |
T |
|
| Q |
117 |
ccaccctttgacgaaactgtcgaactaatagaagtcgttttctgcatgcttttccttctcactcgtacctgtaagtcttt |
196 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
28157473 |
gcaccctttgatgaaactgtcgaactaatagaagtcgttttctgcacgcttttccttctcactcgtacctgtaagtcttt |
28157552 |
T |
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