View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19687_high_72 (Length: 210)
Name: NF19687_high_72
Description: NF19687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19687_high_72 |
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Alignment Details
Target: chr2 (Bit Score: 144; Significance: 7e-76; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 17 - 168
Target Start/End: Complemental strand, 44555570 - 44555419
Alignment:
| Q |
17 |
aatatctgaatgataagaaaattggttgtaaacgtgcaatggtggaagaaaatggaattcaagtggatcaattgttttttcatgacccagatggattcat |
116 |
Q |
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| T |
44555570 |
aatatctgaatgataagaaaattggctgtaaacgtgcaatggtggaagaaaatggaattcaagtggatcaattgttttttcatgacccagatggatttat |
44555471 |
T |
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| Q |
117 |
gattgaaatatgcaattgtgatagtcttcctgttattcccttagctggtgaa |
168 |
Q |
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| T |
44555470 |
gattgaaatatgcaattgtgatagtcttcctgttattcccttagctggtgaa |
44555419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 17 - 167
Target Start/End: Complemental strand, 44544928 - 44544778
Alignment:
| Q |
17 |
aatatctgaatgataagaaaattggttgtaaacgtgcaatggtggaagaaaatggaattcaagtggatcaattgttttttcatgacccagatggattcat |
116 |
Q |
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|||||||||||||||| ||||||| |||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
44544928 |
aatatctgaatgataaaaaaattgtttgtaagcgtgcattggtggaagaaaatggaattcaagtggatcaattgttttttcatgacccagatggatttat |
44544829 |
T |
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| Q |
117 |
gattgaaatatgcaattgtgatagtcttcctgttattcccttagctggtga |
167 |
Q |
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| T |
44544828 |
gattgaaatatgcaattgtgatagtctcccagttattcctctagctggtga |
44544778 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 134
Target Start/End: Original strand, 375982 - 376047
Alignment:
| Q |
69 |
tggaattcaagtggatcaattgttttttcatgacccagatggattcatgattgaaatatgcaattg |
134 |
Q |
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| T |
375982 |
tggaattaaggttgatcaattgttctttcatgatccagatggatatatgattgaaatgtgcaattg |
376047 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 106; Significance: 3e-53; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 17 - 166
Target Start/End: Original strand, 51845919 - 51846068
Alignment:
| Q |
17 |
aatatctgaatgataagaaaattggttgtaaacgtgcaatggtggaagaaaatggaattcaagtggatcaattgttttttcatgacccagatggattcat |
116 |
Q |
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||||| |||| |||| ||||||||||| |||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
51845919 |
aatatttgaaggatatgaaaattggtttaaaacgtgcaatggttgaggaaaatggaattcaagtggatcagttgttttttcatgacccagatggattcat |
51846018 |
T |
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| Q |
117 |
gattgaaatatgcaattgtgatagtcttcctgttattcccttagctggtg |
166 |
Q |
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| T |
51846019 |
gattgagatatgcaattgtgatagtctccctgttattcctttagctggtg |
51846068 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 3e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 91 - 168
Target Start/End: Original strand, 2573272 - 2573349
Alignment:
| Q |
91 |
ttttttcatgacccagatggattcatgattgaaatatgcaattgtgatagtcttcctgttattcccttagctggtgaa |
168 |
Q |
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||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||| |||| ||||||| |
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| T |
2573272 |
tttttccatgacccagatggtttcatgattgagatatgcaattgtgatagtcttcctgtgattccattagttggtgaa |
2573349 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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