View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19687_high_8 (Length: 530)

Name: NF19687_high_8
Description: NF19687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19687_high_8
NF19687_high_8
[»] chr7 (5 HSPs)
chr7 (164-514)||(42251442-42251789)
chr7 (11-161)||(42022793-42022932)
chr7 (9-114)||(37486065-37486172)
chr7 (25-142)||(33524778-33524895)
chr7 (98-140)||(22620835-22620877)
[»] chr5 (1 HSPs)
chr5 (25-93)||(41364679-41364747)
[»] chr6 (2 HSPs)
chr6 (335-421)||(19473474-19473560)
chr6 (11-152)||(1825868-1825997)
[»] scaffold0332 (1 HSPs)
scaffold0332 (52-142)||(11965-12055)
[»] chr8 (2 HSPs)
chr8 (407-480)||(11677409-11677482)
chr8 (46-142)||(39587307-39587403)
[»] chr2 (4 HSPs)
chr2 (46-142)||(41125431-41125527)
chr2 (31-111)||(44512499-44512579)
chr2 (14-80)||(45134692-45134759)
chr2 (31-140)||(37860342-37860451)
[»] chr4 (4 HSPs)
chr4 (86-140)||(14271027-14271081)
chr4 (31-140)||(18102733-18102842)
chr4 (11-79)||(24899371-24899440)
chr4 (32-80)||(56329235-56329283)
[»] scaffold0012 (1 HSPs)
scaffold0012 (31-76)||(177590-177635)
[»] chr1 (1 HSPs)
chr1 (11-80)||(31231089-31231158)
[»] chr3 (2 HSPs)
chr3 (16-75)||(34329296-34329357)
chr3 (105-142)||(5411414-5411451)


Alignment Details
Target: chr7 (Bit Score: 238; Significance: 1e-131; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 164 - 514
Target Start/End: Complemental strand, 42251789 - 42251442
Alignment:
Q  164 tggcgtttaacatgggaaaattgagttttttcccatgatgcacaaatgtcactttttctggcacgtgtcattttccactggttggtnnnnnnntaagann 263  Q
    ||||||||||| | ||||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||| |||||||       |||||      
T  42251789 tggcgtttaacctaggaaaattgagttctttcc-atgaggcacaaatgtcactttttctggcacgtgtcattttccaccggttggtaaaaaaataagatt 42251691  T
Q  264 nnnnnngtcaaattgataaaacaatatttaatagccatcaattatttcaattacacctcccaaataaaaatctgcacttcccctttctccatctacatat 363  Q
          |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| ||||| ||||||||||||||||||||||    
T  42251690 ttttttgtcaaatt-ataaaacaatatttaatagccatcaattatttcaattacatctcccaattaaaaatttgcacctcccctttctccatctacatat 42251592  T
Q  364 cttaacgttctatcatcctggccatggtgctgttgctgctgagtttgcacagtacaatctgcacctccgtcgtctcttatttatcgctacttctaccact 463  Q
    || ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42251591 ct-aacgttctaccatcctggccatggtgctgttgctgctgagtttgcacagtacaatctgcacctccgtcgtctcttatttatcgctacttctaccact 42251493  T
Q  464 tttcctatgtgaacgtcctctctagttctcaatagttgttatccgccactt 514  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  42251492 ttttctatgtgaacgtcctctctagttctcaatagttgttatccgccactt 42251442  T

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Target: chr7; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 11 - 161
Target Start/End: Complemental strand, 42022932 - 42022793
Alignment:
Q  11 tattctaacaaactaattcatcattcattcatttcataatgattacaatc-accaatcacttatttatagcctcgatattctaacaacttcacctatgac 109  Q
    ||||||||||||||||||| |||||||||||||||||||| |||||| |  | |||||||||||||||||  | ||||||||||            ||||    
T  42022932 tattctaacaaactaattcttcattcattcatttcataatcattacatttgatcaatcacttatttatagttttgatattctaa------------tgac 42022845  T
Q  110 tcatcacaatggatctctctagatccttctagagagcatgacttatcaccta 161  Q
    ||||||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  42022844 tcatcacaatggaactctctagatccttctagagagcatgactcatcaccta 42022793  T

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Target: chr7; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 9 - 114
Target Start/End: Original strand, 37486065 - 37486172
Alignment:
Q  9 attattctaacaaactaatt--catcattcatt-catttcataatgattacaatcaccaatcacttatttatagcctcgatattctaacaacttcaccta 105  Q
    ||||||||||||||||||||  | ||||||||| ||||| ||||||||||||||||||||||| ||||||||| | |   |||||||||||||| ||| |    
T  37486065 attattctaacaaactaattttcttcattcatttcatttgataatgattacaatcaccaatcatttatttataacatgtgtattctaacaactt-accaa 37486163  T
Q  106 tgactcatc 114  Q
    |||||||||    
T  37486164 tgactcatc 37486172  T

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Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 25 - 142
Target Start/End: Original strand, 33524778 - 33524895
Alignment:
Q  25 aattcatcattcattcatttcataatgattacaatcaccaatcacttatttatagcctcgatattctaacaacttcacctatgactcatcacaatggatc 124  Q
    ||||| |||||||||||||| |||||||||||||| | || || || ||||||||| |   |||| |||||| || |||||||| |||||  ||| ||||    
T  33524778 aattcttcattcattcatttgataatgattacaatgatcattccctgatttatagcatttgtattgtaacaatttaacctatgattcatcctaatagatc 33524877  T
Q  125 tctctagatccttctaga 142  Q
     |||||||||||||||||    
T  33524878 cctctagatccttctaga 33524895  T

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Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 98 - 140
Target Start/End: Original strand, 22620835 - 22620877
Alignment:
Q  98 ttcacctatgactcatcacaatggatctctctagatccttcta 140  Q
    ||||||||||||||||||||||| |||||||||||||||||||    
T  22620835 ttcacctatgactcatcacaatgaatctctctagatccttcta 22620877  T

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Target: chr5 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 25 - 93
Target Start/End: Complemental strand, 41364747 - 41364679
Alignment:
Q  25 aattcatcattcattcatttcataatgattacaatcaccaatcacttatttatagcctcgatattctaa 93  Q
    ||||| ||||||||||||||||||||||||||||||| ||||||||| |||||||||| ||||||||||    
T  41364747 aattcttcattcattcatttcataatgattacaatcatcaatcacttctttatagccttgatattctaa 41364679  T

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Target: chr6 (Bit Score: 44; Significance: 8e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 335 - 421
Target Start/End: Complemental strand, 19473560 - 19473474
Alignment:
Q  335 ctgcacttcccctttctccatctacatatcttaacgttctatcatcctggccatgg-tgctgttgctgctgagtttgcacagtacaat 421  Q
    |||||| |||||||||||||||||||| ||| || |||| |||||| ||||||||| || ||||||||||||||||||||| ||||||    
T  19473560 ctgcacctcccctttctccatctacatctct-aatgttcaatcatcttggccatgggtgatgttgctgctgagtttgcacactacaat 19473474  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 11 - 152
Target Start/End: Complemental strand, 1825997 - 1825868
Alignment:
Q  11 tattctaacaaactaattcatcattcattcatttcataatgattacaatcaccaatcacttatttatagcctcgatattctaacaacttcacctatgact 110  Q
    |||||||| |||||||||| ||| |||||||||||| |||||||||||| || || |  ||||||||||| | || ||         ||||   ||||||    
T  1825997 tattctaaaaaactaattcttcactcattcatttcacaatgattacaatgacaaaaccattatttatagcattgacat---------ttca---atgact 1825910  T
Q  111 catcacaatggatctctctagatccttctagagagcatgact 152  Q
    |||||||| ||||||||||||||| ||||||| |||||||||    
T  1825909 catcacaaaggatctctctagatcattctagaaagcatgact 1825868  T

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Target: scaffold0332 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0332
Description:

Target: scaffold0332; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 52 - 142
Target Start/End: Complemental strand, 12055 - 11965
Alignment:
Q  52 attacaatcaccaatcacttatttatagcctcgatattctaacaacttcacctatgactcatcacaatggatctctctagatccttctaga 142  Q
    |||||||| | |||||||||||||||| | ||   ||||||||||||| ||  |||| |||||| ||||||||||||||||||||||||||    
T  12055 attacaatgaacaatcacttatttataacatcagcattctaacaacttaactaatgagtcatcataatggatctctctagatccttctaga 11965  T

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Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 407 - 480
Target Start/End: Original strand, 11677409 - 11677482
Alignment:
Q  407 tttgcacagtacaatctgcacctccgtcgtctcttatttatcgctacttctaccacttttcctatgtgaacgtc 480  Q
    ||||||||||||||| ||||||||| | ||||||| |||||| ||| ||| ||||| |||||||||||||||||    
T  11677409 tttgcacagtacaatttgcacctccattgtctcttgtttatctctatttcaaccacatttcctatgtgaacgtc 11677482  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 46 - 142
Target Start/End: Complemental strand, 39587403 - 39587307
Alignment:
Q  46 ataatgattacaatcaccaatcacttatttatagcctcgatattctaacaacttcacctatgactcatcacaatggatctctctagatccttctaga 142  Q
    |||||||||||||| | || || |||||||||||| |    ||||||||||||| ||| || ||||| || |||||||||||| |||||||||||||    
T  39587403 ataatgattacaatgatcattcccttatttatagcttttgcattctaacaacttaaccaattactcaccataatggatctctcaagatccttctaga 39587307  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 46 - 142
Target Start/End: Complemental strand, 41125527 - 41125431
Alignment:
Q  46 ataatgattacaatcaccaatcacttatttatagcctcgatattctaacaacttcacctatgactcatcacaatggatctctctagatccttctaga 142  Q
    |||||||||| |||||| |||||||||||||||   | | |||||||||||||| ||  ||||||| ||||||| ||||||| | ||||||||||||    
T  41125527 ataatgattagaatcactaatcacttatttataaagttggtattctaacaacttaactaatgactcgtcacaattgatctctttggatccttctaga 41125431  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 31 - 111
Target Start/End: Complemental strand, 44512579 - 44512499
Alignment:
Q  31 tcattcattcatttcataatgattacaatcaccaatcacttatttatagcctcgatattctaacaacttcacctatgactc 111  Q
    |||||||||||||| ||||| || ||||| |  ||||||||||||||| ||| |||||| ||| |||||||||||||||||    
T  44512579 tcattcattcatttgataatcataacaatgataaatcacttatttataaccttgatattataataacttcacctatgactc 44512499  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 80
Target Start/End: Original strand, 45134692 - 45134759
Alignment:
Q  14 tctaacaaactaattcat-cattcattcatttcataatgattacaatcaccaatcacttatttatagc 80  Q
    ||||||||||||||| || ||||||||||||| ||| |||||||||| ||||| |  |||||||||||    
T  45134692 tctaacaaactaatttattcattcattcatttgatattgattacaataaccaacctattatttatagc 45134759  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 140
Target Start/End: Original strand, 37860342 - 37860451
Alignment:
Q  31 tcattcattcatttcataatgattacaatcaccaatcacttatttatagcctcgatattctaacaacttcacctatgactcatcacaatggatctctcta 130  Q
    |||||||||||||| |||||||||||||| |||| |   | ||||||||| | || ||||||| || |  ||| ||||||||||| || || ||||||||    
T  37860342 tcattcattcatttgataatgattacaatgaccactacataatttatagcattgacattctaagaattaaaccaatgactcatcataacgggtctctcta 37860441  T
Q  131 gatccttcta 140  Q
     | |||||||    
T  37860442 cacccttcta 37860451  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 86 - 140
Target Start/End: Original strand, 14271027 - 14271081
Alignment:
Q  86 tattctaacaacttcacctatgactcatcacaatggatctctctagatccttcta 140  Q
    ||||||||||| || ||| ||||||||||| ||||||||||||||||||||||||    
T  14271027 tattctaacaatttaaccaatgactcatcataatggatctctctagatccttcta 14271081  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 140
Target Start/End: Original strand, 18102733 - 18102842
Alignment:
Q  31 tcattcattcatttcataatgattacaatcaccaatcacttatttatagcctcgatattctaacaacttcacctatgactcatcacaatggatctctcta 130  Q
    |||||||||||||| |||||||||||||| |||| |   | ||||||||| | || ||||||| || |  ||| ||||||||||| || || ||||||||    
T  18102733 tcattcattcatttgataatgattacaatgaccactacataatttatagcattgacattctaagaattaaaccaatgactcatcataacgggtctctcta 18102832  T
Q  131 gatccttcta 140  Q
     | |||||||    
T  18102833 cacccttcta 18102842  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 79
Target Start/End: Complemental strand, 24899440 - 24899371
Alignment:
Q  11 tattctaacaaactaattcatcattcattca-tttcataatgattacaatcaccaatcacttatttatag 79  Q
    ||||||||||||||| ||| ||||||||| | ||| || ||||||||||| |||||||  ||||||||||    
T  24899440 tattctaacaaactatttcttcattcatttattttgattatgattacaatgaccaatccattatttatag 24899371  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 32 - 80
Target Start/End: Complemental strand, 56329283 - 56329235
Alignment:
Q  32 cattcattcatttcataatgattacaatcaccaatcacttatttatagc 80  Q
    ||||||||||||| |||||||||| ||| ||||| || |||||||||||    
T  56329283 cattcattcatttgataatgattataatgaccaaccaattatttatagc 56329235  T

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Target: scaffold0012 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 31 - 76
Target Start/End: Complemental strand, 177635 - 177590
Alignment:
Q  31 tcattcattcatttcataatgattacaatcaccaatcacttattta 76  Q
    ||||||||||||||||||||||||| ||| ||||||||||||||||    
T  177635 tcattcattcatttcataatgattataatgaccaatcacttattta 177590  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 11 - 80
Target Start/End: Original strand, 31231089 - 31231158
Alignment:
Q  11 tattctaacaaactaattcatcattcattcatttcataatgattacaatcaccaatcacttatttatagc 80  Q
    ||||||| ||||||||||  |  ||||||||||| |||| |||||||||||||||||| |||||||||||    
T  31231089 tattctagcaaactaatttcttcttcattcatttgataaagattacaatcaccaatcatttatttatagc 31231158  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 34329296 - 34329357
Alignment:
Q  16 taacaaactaatt-catcattcattc-atttcataatgattacaatcaccaatcacttattt 75  Q
    ||||||||||||| | |||||||||| ||||||||||||| ||||| |||||||||||||||    
T  34329296 taacaaactaatttcttcattcattccatttcataatgatcacaatgaccaatcacttattt 34329357  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 105 - 142
Target Start/End: Complemental strand, 5411451 - 5411414
Alignment:
Q  105 atgactcatcacaatggatctctctagatccttctaga 142  Q
    ||||||||||| || |||||||||||||||||||||||    
T  5411451 atgactcatcataaaggatctctctagatccttctaga 5411414  T

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