View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19687_low_11 (Length: 515)
Name: NF19687_low_11
Description: NF19687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19687_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 385; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 94 - 494
Target Start/End: Complemental strand, 35145878 - 35145478
Alignment:
| Q |
94 |
agggactatatgttcacgaggccttgcttagctatgactccaaaactgatacctttcaagcaaggtatacatacgggtagactcacactcttaaacaaaa |
193 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |
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| T |
35145878 |
agggactatatgttcacgaggccttgcttagctatgactccaaaactgatacctttcaagcaaggtatacatacgggtggaatcacactcttaaacaaaa |
35145779 |
T |
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| Q |
194 |
tactactctagtattgtcataatattttttctctttcaacaagttaaattttgtgatgacattaacggttttatatgagtttaataatttgattatatgg |
293 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35145778 |
tactactctagtattgtcataatattttttctctttcaacaagttaaattttgtgatgacattaacggttttatatgagtttaataatttgattatatgg |
35145679 |
T |
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| Q |
294 |
aggtgattaaaatgtgtttcatttaggacacgcagtgggaattggaggattgtggggaataaaatccactgggataagcttagaccatccctagttgaaa |
393 |
Q |
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| T |
35145678 |
aggtgattaaaatgtgtttcatttaggacacgcagtgggaattggaggattgtggggaataaaatccactgggataagcttagaccatccctagttgaaa |
35145579 |
T |
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| Q |
394 |
cctcttcatgtgttcgccacgtgtctgattgttatcaagatttaaagcctggggatcatattgaaattcaatggagaggaaacactcaaactccttatgg |
493 |
Q |
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| T |
35145578 |
cctcttcatgtgttcgccacgtgtctgattgttatcaagatttaaaacttggggatcatattgaaattcaatggagaggaaacactcaaactccttatgg |
35145479 |
T |
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| Q |
494 |
t |
494 |
Q |
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| T |
35145478 |
t |
35145478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 10 - 47
Target Start/End: Complemental strand, 35145935 - 35145898
Alignment:
| Q |
10 |
attattctccggagtcatatcaaaattcttaaaacgag |
47 |
Q |
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| T |
35145935 |
attattctccggagtcatatcaaaattcttaaaacgag |
35145898 |
T |
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