View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19687_low_13 (Length: 485)
Name: NF19687_low_13
Description: NF19687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19687_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 13 - 468
Target Start/End: Original strand, 41552480 - 41552937
Alignment:
| Q |
13 |
agcataggggagaatttatgtaacattctcttgctcacactatggtactttcc-tgtgtggagaggctatttcttgtaagtaaatggtttatatgcaata |
111 |
Q |
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| T |
41552480 |
agcataggggagaatttatgtaacattctcttgctcacactatggttctttccctgtgtggagaggctatttcttgtaagtaaatggtttatatgcaata |
41552579 |
T |
|
| Q |
112 |
aagggcttgctaatagaatttctcttatgccaaatttaccttttcattgtctgttttattatcttcaaataattgatagaagtattttcactgcttgatg |
211 |
Q |
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| T |
41552580 |
aagggcttgctaatagaatttctcttatgccaaatttactttttcattgtctgttttattatcttcaaataattgatagaagtattttcactgcttgatg |
41552679 |
T |
|
| Q |
212 |
agtgtatatgtagttacctattttctaaatgatcacctaaactattaggnnnnnnnnngcctaattttaaaaaatattattttggcgtaaaggaagacaa |
311 |
Q |
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| T |
41552680 |
agtgtatatgtagttacctattttctaaatgatcacctaaactattaggtttttttttgcctaattttaaaaaatattattttggcgtaaaggaagacaa |
41552779 |
T |
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| Q |
312 |
gacaacaaagttatcccctccaatccatggccaatgtttggttatgtaattggaagggcacgtggttgcatgtgttgaaaaaggataaagtttatatgca |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41552780 |
gacaacaaagttatcccctccaatccatggccaatgtttggttatgtaattggaagggcacgtggttgcatgtgttgaaaaaggataaagtttatatgca |
41552879 |
T |
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| Q |
412 |
tattcaaatatgtacccaaaagaataatctaatattgg-ttatatggagctagtaact |
468 |
Q |
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| T |
41552880 |
tattcaaatatgtacccaaaagaataatctaatattggtttatatggagctagtaact |
41552937 |
T |
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