View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19687_low_14 (Length: 474)
Name: NF19687_low_14
Description: NF19687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19687_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 250; Significance: 1e-139; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 184 - 453
Target Start/End: Original strand, 46788319 - 46788588
Alignment:
| Q |
184 |
tggaggtagtaatagtaaagtttgcgtattggttatactaatactagtctatgaaataatttggatcctgatgattctctctttttctccaacgagttca |
283 |
Q |
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| T |
46788319 |
tggaggtagtaatagtaaagtttgcgtattggttatactaatactagtctatgaaataatttggatcctgatgattctctctttttctccaacgagttca |
46788418 |
T |
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| Q |
284 |
tgatggaacgatttgatttttataccccctggaaaaagcccctttaaacatatacaagaaattaatgcttaattctctgggagcaaacttaagctaacca |
383 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| || ||||||| |
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| T |
46788419 |
tgatggaacgatttgatttttataccccctggaaaaagccactttcaacatatacaagaaattaatgcttaattctctgggagcaaactcaatctaacca |
46788518 |
T |
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| Q |
384 |
tagtaatagttttatgtggttttcttgagcaaattggatgtttttgttgagatgtcatgacctctccctt |
453 |
Q |
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| T |
46788519 |
tagtaatagttttatgtggttttcttgagcaaattggatgttattgttgagatgtcatgacctctccctt |
46788588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 1 - 154
Target Start/End: Original strand, 46788133 - 46788286
Alignment:
| Q |
1 |
taaattgtaaagttttaataaaaaatatgagccaatgtgtaaattttaaaacatataagaaccaatctgcataatttgaaataatcaaaatgatcaattt |
100 |
Q |
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| T |
46788133 |
taaattgtaaagttttaataaaaaatatgagtcaatgtgtaaattttaaaacatataagaaccaatctgcataatttgaaataatcaaaatgatcaattt |
46788232 |
T |
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| Q |
101 |
gagattcacattacatagaattagaaagaaattccaaattcttagttgatattt |
154 |
Q |
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| T |
46788233 |
gagattcaacttacatagaattagaaagaaattccaaattcttagttgatattt |
46788286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 293 - 433
Target Start/End: Original strand, 46781025 - 46781165
Alignment:
| Q |
293 |
gatttgatttttataccccctggaaaaagcccctttaaacatatacaagaaattaatgcttaattctctgggagcaaacttaagctaaccatagtaatag |
392 |
Q |
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|||||||||||||| |||||||||||||||| | | ||||||||||||||||||| | ||||||| ||||||||||||||||||||||||||||||| |
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| T |
46781025 |
gatttgatttttattccccctggaaaaagccgttctcaacatatacaagaaattaaggtttaattccgcgggagcaaacttaagctaaccatagtaatag |
46781124 |
T |
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| Q |
393 |
ttttatgtggttttcttgagcaaattggatgtttttgttga |
433 |
Q |
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| T |
46781125 |
ttttatgtggttttcttgagcaaattggatgttattgttga |
46781165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 184 - 216
Target Start/End: Original strand, 46780901 - 46780933
Alignment:
| Q |
184 |
tggaggtagtaatagtaaagtttgcgtattggt |
216 |
Q |
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| T |
46780901 |
tggaggtagtaatagtaaagtttgcttattggt |
46780933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 32 - 85
Target Start/End: Original strand, 6865843 - 6865896
Alignment:
| Q |
32 |
ccaatgtgtaaattttaaaacatataagaaccaatctgcataatttgaaataat |
85 |
Q |
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| T |
6865843 |
ccaatgtgtattttttagaacatataagaatcaatttgcataatttgaaataat |
6865896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 80
Target Start/End: Original strand, 36028866 - 36028927
Alignment:
| Q |
20 |
aaaaaatatgagccaatgtgtaaat-tttaaaacatataagaaccaatctgcataatttgaa |
80 |
Q |
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|||||||| | || ||||||||| | ||| |||||||||||||||||| ||||||||||||| |
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| T |
36028866 |
aaaaaataggggctaatgtgtaattgtttgaaacatataagaaccaatttgcataatttgaa |
36028927 |
T |
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