View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19687_low_17 (Length: 432)
Name: NF19687_low_17
Description: NF19687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19687_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 411; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 1 - 423
Target Start/End: Original strand, 2745123 - 2745545
Alignment:
| Q |
1 |
ttgtataattgttatatgattgcataaaataatcacatggctttatattttagtcttgattattatgttttgtataggttcaattttgatgatgaattgt |
100 |
Q |
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| T |
2745123 |
ttgtataattgttatatgattgcttaaaataatcacatgactttatattttagtcttgattattatgttttgtataggttcaattttgatgatgaattgt |
2745222 |
T |
|
| Q |
101 |
cactaatggaatttaacctaattttgctaggtttttagataaagcagcatttattacaccaaaagatttgaagcaaatggaagaaaataaatgcagtcca |
200 |
Q |
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| T |
2745223 |
cactaatggaatttaacctaattttgctaggtttttagataaagcagcatttattacaccaaaagatttgaagcaaatggaagaaaataaatgcagtcca |
2745322 |
T |
|
| Q |
201 |
tggtttctatcaactgtgacacaagtagaagaagtgaaatgcatattaagattactcccaatttggttatgcactatattattctctgttgtcttcagtc |
300 |
Q |
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| T |
2745323 |
tggtttctatcaactgtgacacaagtagaagaagtgaaatgcatattaagattactcccaatttggttatgcactatattattctctgttgtcttcagtc |
2745422 |
T |
|
| Q |
301 |
aaatggcatcactctttgtggaacaaggtgctgcaatggagactaaaatttccacttttcacatccctcctgcaagtatgtcaagctttgacattctcag |
400 |
Q |
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| T |
2745423 |
aaatggcatcactctttgtggaacaaggtgctgcaatggagactaaaatttccacttttcacatccctcctgcaagtatgtcaagctttgacattctcag |
2745522 |
T |
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| Q |
401 |
tgtagtttctttcatcttcatct |
423 |
Q |
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| T |
2745523 |
tgtagtttccttcatcttcatct |
2745545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 338
Target Start/End: Original strand, 40743734 - 40743850
Alignment:
| Q |
222 |
caagtagaagaagtgaaatgcatattaagattactcccaatttggttatgcactatattattctctgttgtcttcagtcaaatggcatcactctttgtgg |
321 |
Q |
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| T |
40743734 |
caagttgaagaagtaaaatgcatactaagacttcttccaatttggctttgcacaataatctactcagtagttttcactcagatggcttccctttttgtgg |
40743833 |
T |
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| Q |
322 |
aacaaggtgctgcaatg |
338 |
Q |
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| T |
40743834 |
agcaaggtgctgcaatg |
40743850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 213 - 274
Target Start/End: Original strand, 8469730 - 8469791
Alignment:
| Q |
213 |
actgtgacacaagtagaagaagtgaaatgcatattaagattactcccaatttggttatgcac |
274 |
Q |
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| T |
8469730 |
actgtgacacaagttgaagaagtgaaatgtattttgagactattgccagtttggttatgcac |
8469791 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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