View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19687_low_18 (Length: 432)
Name: NF19687_low_18
Description: NF19687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19687_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 30240218 - 30240434
Alignment:
| Q |
1 |
cacttcatgcaaaaaagaataataagccccatcaaagttgacaggaagctagtagcataagtgcacaatgatgttgtttaagtcccacatcggaagattt |
100 |
Q |
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| T |
30240218 |
cacttcatgcaaaaaagaataataagccccatcaaagttgacaggaagctagtagcataagtgcacaatgatgttgtttaagtcccatatcggaagattt |
30240317 |
T |
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| Q |
101 |
gagagaacaagagaagaaagctatctataaaagcaaccaaatgtattgcaaattatttggatttgaggatacacagcagtggagtaataaatggcggtgt |
200 |
Q |
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| T |
30240318 |
gagagaacaagagaagaaagctatctataaaatcaaccaaatgtattgcaaattatttggatttgaggatacacagcagtgtagtaataaatggcggtgt |
30240417 |
T |
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| Q |
201 |
cttcatttgaccattga |
217 |
Q |
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| T |
30240418 |
cttcatttgaccattga |
30240434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 319 - 422
Target Start/End: Original strand, 30240522 - 30240624
Alignment:
| Q |
319 |
ttgactgtgtgctatgactatttcttatatattgatcactaatatgactatgtctcannnnnnnaaagttcaagctttttatcaaccaattgtgttatcc |
418 |
Q |
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|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |
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| T |
30240522 |
ttgactatgtgctatgactatttcttatatattgatcaccaatatgactatgtctcatttttttaaagttcaagc-ttttatcaaccaattgtgttatcc |
30240620 |
T |
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| Q |
419 |
tttg |
422 |
Q |
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|||| |
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| T |
30240621 |
tttg |
30240624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 78 - 143
Target Start/End: Original strand, 26637685 - 26637750
Alignment:
| Q |
78 |
ttaagtcccacatcggaagatttgagagaacaagagaagaaagctatctataaaagcaaccaaatg |
143 |
Q |
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| T |
26637685 |
ttaagtcccacatcggatgatttgaaagaacaagagaagagagctgtttataaaaccaaccaaatg |
26637750 |
T |
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