View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19687_low_20 (Length: 400)

Name: NF19687_low_20
Description: NF19687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19687_low_20
NF19687_low_20
[»] chr7 (3 HSPs)
chr7 (15-269)||(48446796-48447050)
chr7 (301-390)||(48447082-48447171)
chr7 (347-384)||(38821577-38821614)
[»] chr2 (1 HSPs)
chr2 (340-380)||(5171435-5171475)
[»] chr8 (1 HSPs)
chr8 (347-383)||(41787851-41787887)
[»] chr1 (1 HSPs)
chr1 (337-365)||(25175640-25175668)


Alignment Details
Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 15 - 269
Target Start/End: Original strand, 48446796 - 48447050
Alignment:
Q  15 atgtacatgtgtatatatacatgcattcattcatttccatattctttatttttctacccctgcttatgatcagatttgctatatcttacatcgctcatgc 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||    
T  48446796 atgtacatgtgtatatatacatgcattcattcatttccatattctttatttttctagccctgcttatgatcagatttgctatatcttacatctctcatgc 48446895  T
Q  115 tccacacacttttcctcctcctttcatctttaagtttgatttcttacactattatttnnnnnnnnnnnnnnnnngaataactaaactataaatgtgaagt 214  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||                 ||||||||||||||||||||||||||    
T  48446896 tccacacacctttcctcctcctttcatctttaagtttgatttcttacactattatttaaaaattaaaattaaaagaataactaaactataaatgtgaagt 48446995  T
Q  215 ttttattggtaacttctcaaaagtcagttttcataaatgatattacaattgcagc 269  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48446996 ttttattggtaacttctcaaaagtcagttttcataaatgatattacaattgcagc 48447050  T

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Target: chr7; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 301 - 390
Target Start/End: Original strand, 48447082 - 48447171
Alignment:
Q  301 tatttttagggtcatgctagggagagatagttaatgaacaaaaaaggtaaattttatattgaaaataatattttttacactttaagtatt 390  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||    
T  48447082 tatttttagggtcatgctagggagagatagttaatgaacaaaaaaggtaaattttgtattgaaaataacattttttacactttaagtatt 48447171  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 347 - 384
Target Start/End: Original strand, 38821577 - 38821614
Alignment:
Q  347 gtaaattttatattgaaaataatattttttacacttta 384  Q
    ||||||||| ||||||||| ||||||||||||||||||    
T  38821577 gtaaattttgtattgaaaagaatattttttacacttta 38821614  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 340 - 380
Target Start/End: Original strand, 5171435 - 5171475
Alignment:
Q  340 aaaaaaggtaaattttatattgaaaataatattttttacac 380  Q
    |||||| ||||||||||||||||||||||||||||||||||    
T  5171435 aaaaaaagtaaattttatattgaaaataatattttttacac 5171475  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 347 - 383
Target Start/End: Original strand, 41787851 - 41787887
Alignment:
Q  347 gtaaattttatattgaaaataatattttttacacttt 383  Q
    |||||||||| ||||||||||| ||||||||||||||    
T  41787851 gtaaattttacattgaaaataacattttttacacttt 41787887  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 337 - 365
Target Start/End: Original strand, 25175640 - 25175668
Alignment:
Q  337 aacaaaaaaggtaaattttatattgaaaa 365  Q
    |||||||||||||||||||||||||||||    
T  25175640 aacaaaaaaggtaaattttatattgaaaa 25175668  T

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