View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19687_low_25 (Length: 384)
Name: NF19687_low_25
Description: NF19687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19687_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 17 - 338
Target Start/End: Complemental strand, 51011926 - 51011603
Alignment:
| Q |
17 |
aaattgcatattagtctctctactttttgggatatacagggggnnnnnnngaaaagaaagagacatggatttaaatggcacataaaaattgttatcttgt |
116 |
Q |
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| T |
51011926 |
aaattgcatattagtctctctactttttgggatataaagggg--aaaaaagaaaagaaagagacatggatttaaatgccacataaaaattgttatcttgt |
51011829 |
T |
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| Q |
117 |
aacaataacgaacttggatcatctccatccatttctctattcactctttatgtatgtatacaagagagatagaaatatttatacaagaaaagtgaaaggt |
216 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| ||| |
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| T |
51011828 |
aacaataacgaatttggatcatctccatccatttctctattcactctttatgtatatgagagagagagatagaaatatttatacaagaaaagtgaagggt |
51011729 |
T |
|
| Q |
217 |
gagtatcaaatttcaacaacacatttgaaattgcgtaatttatttgcacattattatg----cttaggttggtaacaacctcttcaattatttccactag |
312 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
51011728 |
gagtatcaaatttcaacaacacatttgaaattgggtaatttatttgcacattattatgcttacttaggttggtaacaacctcttcaattatttccactag |
51011629 |
T |
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| Q |
313 |
gctttccaaagtattgattgaacatt |
338 |
Q |
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||||||||||||||||||||||||| |
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| T |
51011628 |
actttccaaagtattgattgaacatt |
51011603 |
T |
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