View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19687_low_27 (Length: 380)
Name: NF19687_low_27
Description: NF19687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19687_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 27 - 360
Target Start/End: Original strand, 43218990 - 43219322
Alignment:
| Q |
27 |
atctgaaggaagtcaggaactaagctagcttgattttctcttcatcaatctcttcttgattctataggaataaacttgcaatagtcttagttcaacaatg |
126 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43218990 |
atctgaaggaagtcaggaactaagctagcttgattttctcttcatcaatctcttcttgattctataggaataaacttgcaatagtcttagttcaacaatg |
43219089 |
T |
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| Q |
127 |
tgccttgtatatgtggtttgcatgtactgaaagaattattatgtatcagttgttatataatacaatttcaatttgtgtatcaatgattcaaaaatttcaa |
226 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43219090 |
tgccttgtatatgtggtttgcatgtactgaaagaattattatgtatcagttgttatataatacaatttcaatttgtgtatcaatgattcaaaaatttcaa |
43219189 |
T |
|
| Q |
227 |
ccaaattnnnnnnngttaatctgaaagggtacaatccaagacttatatttgatacaaagtctatctcacatatttacaagagactccagcaataaatatg |
326 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43219190 |
ccaaatt-aaaaaagttaatctgaaagggtacaatccaagacttatattttatacaaagtctatctcacatatttacaagagactccagcaataaatatg |
43219288 |
T |
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| Q |
327 |
acgagtttcttgtcaacaattttaaaattcattt |
360 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
43219289 |
acgagtttcttgtcaacaattttaaaattcattt |
43219322 |
T |
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