View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19687_low_29 (Length: 362)
Name: NF19687_low_29
Description: NF19687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19687_low_29 |
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Alignment Details
Target: chr5 (Bit Score: 151; Significance: 8e-80; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 173 - 352
Target Start/End: Complemental strand, 27309203 - 27309028
Alignment:
| Q |
173 |
aagtctcctgtgatcattccttgctgtattcgtaacaggtgggacaattgcaagcttcttgctagtaatatgaacttaatggtaactcatatatataggg |
272 |
Q |
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| T |
27309203 |
aagtctcctgtgatcattccttgctatattcgtaacaagtgggacaattgcaagcttcttgctagtaatatgaacttaatggtaactcatatatataggg |
27309104 |
T |
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| Q |
273 |
agggaaatcaaattgcagacaagttggctaatgttgggctgtccatccaatccttaactgtttggtttagtatccctttg |
352 |
Q |
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| T |
27309103 |
agggaaatcaaattgcagacaagttggctaatgttgggctgtccatccaatc----attgtttggtttagtatccctttg |
27309028 |
T |
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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 125 - 309
Target Start/End: Complemental strand, 12105929 - 12105745
Alignment:
| Q |
125 |
agaaacctttggattgagactgattcttcattggttgttcatgcttttaagtctcctgtgatcattccttgctgtattcgtaacaggtgggacaattgca |
224 |
Q |
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| T |
12105929 |
agaaatctttggattgagacggattcatctcatgtggttcatgcttccaagtcttctgcaatcattccttgcagtgtaagaaacaggtgggaaaactgca |
12105830 |
T |
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| Q |
225 |
agcttcttgctagtaatatgaacttaatggtaactcatatatatagggagggaaatcaaattgcagacaagttggctaatgttgg |
309 |
Q |
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| T |
12105829 |
aactgctcactattagcatgaatttaatggttactcatatttacgaggagagaaatcaatgtgctgacaagttggcaaatgttgg |
12105745 |
T |
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