View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19687_low_3 (Length: 665)

Name: NF19687_low_3
Description: NF19687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19687_low_3
NF19687_low_3
[»] chr3 (15 HSPs)
chr3 (221-655)||(10727445-10727876)
chr3 (34-235)||(10727886-10728087)
chr3 (24-235)||(10732800-10733006)
chr3 (23-235)||(10729446-10729658)
chr3 (23-377)||(10729774-10730132)
chr3 (95-209)||(10727420-10727534)
chr3 (18-92)||(10726919-10726993)
chr3 (17-90)||(10732480-10732553)
chr3 (584-655)||(10727937-10728008)
chr3 (584-655)||(10729497-10729568)
chr3 (288-326)||(10732714-10732752)
chr3 (584-644)||(10729977-10730037)
chr3 (410-461)||(10727023-10727074)
chr3 (152-262)||(10730355-10730468)
chr3 (408-461)||(10733042-10733095)


Alignment Details
Target: chr3 (Bit Score: 247; Significance: 1e-137; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 221 - 655
Target Start/End: Complemental strand, 10727876 - 10727445
Alignment:
Q  221 aatcttaatcttaatagaccacaaatgcaaagcatgttttagaaagnnnnnnntaaaatcacacatgtcaagctctaatctaattcttgcaacgtcatac 320  Q
    ||||||||||||||||||||||||||||||||||||||||||||||        |||| ||||||||||||||||||| |||||||||||||||||||||    
T  10727876 aatcttaatcttaatagaccacaaatgcaaagcatgttttagaaagaaaaa---aaaaacacacatgtcaagctctaaactaattcttgcaacgtcatac 10727780  T
Q  321 taaaaatgtaaactttttctttacctaattaagtattgattaattaacatacatcatcatatcttttcaagaaagtattcaaaaagttgatcattatcaa 420  Q
    |||||||||||| ||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  10727779 taaaaatgtaaattttttctttacctaattaagtcttgattaattaacatatatcatcatatcttttcaagaaagtattcaaaaagttgatcattatcaa 10727680  T
Q  421 aactaatgctaaagaagtaaaaacaatttatatacaattttaggacacccattnnnnnnnnnnnnnnnnnnnnnnnnnttggaagtccacatctcctagg 520  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||                         ||||||| ||||||||||||||    
T  10727679 aactaatgctaaagaagtaaaaacaatttatatacaattttaggacactcattaaaatacaaacaaaaacaaaataaattggaagcccacatctcctagg 10727580  T
Q  521 cccaataaatactttcttatttgtagcatctgctcacttcttacgcatcnnnnnnnnnnnntttgtgagaagccatcaaaagtcagaaccataagcacaa 620  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||            ||||||||||||||||||||| ||||| |||||||||||    
T  10727579 cccaataaatactttcttatttgtagcatctgctcacttcttacacatcaaaaaataaaattttgtgagaagccatcaaaagccagaagcataagcacaa 10727480  T
Q  621 tgtgaaaacaatgcttccctgcctccctgcctttg 655  Q
    ||||||||||| |||||||||||||| ||||||||    
T  10727479 tgtgaaaacaacgcttccctgcctccttgcctttg 10727445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 34 - 235
Target Start/End: Complemental strand, 10728087 - 10727886
Alignment:
Q  34 tcacatcacccagactcaataaatgtttaacctatttctggcatctgcttctctcctcacgcatcgaaaagtaaaaatatgtgagaaaccatcaaaagtt 133  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  10728087 tcacatcacccagactcaataaatgtttaacctatttatggcatctgcttctctcctcacgcatcgaaaagtaaaaatatgtgagaagccatcaaaagtt 10727988  T
Q  134 agaagcataagtacaatatgaaaccaacacttccatgcctccgtgcctttgttcagactatatgtagaagacaaaattcacaattgcaatcttaatctta 233  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  10727987 agaagcataagtacaatatgaaaccaacacttccatgcctccgtgcctttgttcagactgtatgtagaagacaaaattcacaattgcaatcttaatctta 10727888  T
Q  234 at 235  Q
    ||    
T  10727887 at 10727886  T

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Target: chr3; HSP #3
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 24 - 235
Target Start/End: Complemental strand, 10733006 - 10732800
Alignment:
Q  24 aattggaagctcacatcacccagactcaataaatgtttaacctatttctggcatctgcttctctcctcacgcatcgaaaagtaaaaatatgtgagaaacc 123  Q
    |||||||||  |||||||||||||| |||||| | |||||||||||||||||||||||||||||||||| ||||| |||| |||||| ||||||||||||    
T  10733006 aattggaagtccacatcacccagacacaataactatttaacctatttctggcatctgcttctctcctcatgcatcaaaaaataaaaacatgtgagaaacc 10732907  T
Q  124 atcaaaagttagaagcataagtacaatatgaaaccaacacttccatgcctccgtgcctttgttcagactatatgtagaagacaaaattcacaattgcaat 223  Q
    || |||||||||||||||||||| ||| ||||| ||||||||||     || ||||||||||||||||||||||||||| |||||| ||  |||||||||    
T  10732906 ataaaaagttagaagcataagtaaaatgtgaaaacaacacttcc-----tcggtgcctttgttcagactatatgtagaaaacaaaaatctaaattgcaat 10732812  T
Q  224 cttaatcttaat 235  Q
    || |||||||||    
T  10732811 ctcaatcttaat 10732800  T

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Target: chr3; HSP #4
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 23 - 235
Target Start/End: Complemental strand, 10729658 - 10729446
Alignment:
Q  23 aaattggaagctcacatcacccagactcaataaatgtttaacctatttctggcatctgcttctctcctcacgcatcgaaaagtaaaaatatgtgagaaac 122  Q
    ||||||||||| ||||||||||| | |||||||||| || ||||||||||| |||||||||||||||||| ||||| |||| ||||| ||||||||||      
T  10729658 aaattggaagcccacatcacccatagtcaataaatgcttgacctatttctgacatctgcttctctcctcatgcatcaaaaaataaaattatgtgagaagt 10729559  T
Q  123 catcaaaagttagaagcataagtacaatatgaaaccaacacttccatgcctccgtgcctttgttcagactatatgtagaagacaaaattcacaattgcaa 222  Q
    |||||||||| ||||||||||| | | | ||||| |||||||||| ||||| | | |||||||| ||||||| |||||||||||||| |||||| | ||     
T  10729558 catcaaaagtcagaagcataagcaaattgtgaaaacaacacttccttgccttccttcctttgtttagactatttgtagaagacaaaaatcacaactccac 10729459  T
Q  223 tcttaatcttaat 235  Q
    | |||||||||||    
T  10729458 tattaatcttaat 10729446  T

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Target: chr3; HSP #5
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 23 - 377
Target Start/End: Complemental strand, 10730132 - 10729774
Alignment:
Q  23 aaattggaagctcacatcacccagactcaataaatgtttaacctatttctggcatctgcttctctcctcacgcatcgaaaag-----taaaaatatgtga 117  Q
    ||||||||||  ||||||||| || | ||||||||||||||||||||||| ||||||||||||||||||| ||||  || |      |||| ||||||||    
T  10730132 aaattggaagtccacatcacctaggcccaataaatgtttaacctatttcttgcatctgcttctctcctcatgcataaaataaattaataaatatatgtga 10730033  T
Q  118 gaaaccatcaaaagttagaagcataagtacaatatgaaaccaacacttccatgcctccgtgcctttgttcagactatatgtagaagacaaaattcac--- 214  Q
    ||| ||||||||||||||| ||||||| | | | ||||| |||||||||| |||||  |||||||||||||  || |||||||||||||||| | |        
T  10730032 gaagccatcaaaagttagatgcataagcaaagtgtgaaaacaacacttccctgcctgagtgcctttgttcaatctgtatgtagaagacaaaaataattgt 10729933  T
Q  215 aattgcaatcttaatcttaatag-------accacaaatgcaaagcatgttttagaaagnnnnnnntaaaatcacacatgtcaagctctaatctaattct 307  Q
    |||||||||||||||||||||         | ||||||||||||||||||||||| |          ||||||||||||||| ||||| ||||||||| |    
T  10729932 aattgcaatcttaatcttaatcttactgttatcacaaatgcaaagcatgttttaggac---------aaaatcacacatgtcgagctcgaatctaattat 10729842  T
Q  308 tgcaacgtcatactaaaaatgtaaactttttctttacctaattaagtattgattaattaacatacatcat 377  Q
    |||||||||| ||||||||  || | |||||| |||||||||||||| |||||| |||||||||||||||    
T  10729841 tgcaacgtcacactaaaaa-atacattttttc-ttacctaattaagtcttgatttattaacatacatcat 10729774  T

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Target: chr3; HSP #6
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 95 - 209
Target Start/End: Complemental strand, 10727534 - 10727420
Alignment:
Q  95 catcgaaaagtaaaaatatgtgagaaaccatcaaaagttagaagcataagtacaatatgaaaccaacacttccatgcctccgtgcctttgttcagactat 194  Q
    |||| |||| ||||| | |||||||| ||||||||||  ||||||||||| ||||| ||||| |||| ||||| ||||||| |||||||||||  ||| |    
T  10727534 catcaaaaaataaaattttgtgagaagccatcaaaagccagaagcataagcacaatgtgaaaacaacgcttccctgcctccttgcctttgttccaactgt 10727435  T
Q  195 atgtagaagacaaaa 209  Q
    |||||||||||||||    
T  10727434 atgtagaagacaaaa 10727420  T

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Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 92
Target Start/End: Complemental strand, 10726993 - 10726919
Alignment:
Q  18 aatataaattggaagctcacatcacccagactcaataaatgtttaacctatttctggcatctgcttctctcctca 92  Q
    |||| ||||||||||||||||||||| | ||  |||||||| |||||||| |||| ||||||| |||||||||||    
T  10726993 aatacaaattggaagctcacatcacctaaacctaataaatgcttaacctagttctagcatctgtttctctcctca 10726919  T

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Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 17 - 90
Target Start/End: Complemental strand, 10732553 - 10732480
Alignment:
Q  17 caatataaattggaagctcacatcacccagactcaataaatgtttaacctatttctggcatctgcttctctcct 90  Q
    ||||| ||||||||||| |||||||||||  || |||||||| |||||||||||||| | || |||||||||||    
T  10732553 caatacaaattggaagcccacatcacccacgctaaataaatgcttaacctatttctgacgtccgcttctctcct 10732480  T

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Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 584 - 655
Target Start/End: Complemental strand, 10728008 - 10727937
Alignment:
Q  584 tgtgagaagccatcaaaagtcagaaccataagcacaatgtgaaaacaatgcttccctgcctccctgcctttg 655  Q
    |||||||||||||||||||| |||| |||||| ||||| ||||| |||  ||||| ||||||| ||||||||    
T  10728008 tgtgagaagccatcaaaagttagaagcataagtacaatatgaaaccaacacttccatgcctccgtgcctttg 10727937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 584 - 655
Target Start/End: Complemental strand, 10729568 - 10729497
Alignment:
Q  584 tgtgagaagccatcaaaagtcagaaccataagcacaatgtgaaaacaatgcttccctgcctccctgcctttg 655  Q
    ||||||||| ||||||||||||||| |||||||| | |||||||||||  ||||| ||||| ||| ||||||    
T  10729568 tgtgagaagtcatcaaaagtcagaagcataagcaaattgtgaaaacaacacttccttgccttccttcctttg 10729497  T

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Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 288 - 326
Target Start/End: Complemental strand, 10732752 - 10732714
Alignment:
Q  288 tcaagctctaatctaattcttgcaacgtcatactaaaaa 326  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  10732752 tcaagctctaatctaattcttgcaacgtcacactaaaaa 10732714  T

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Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 584 - 644
Target Start/End: Complemental strand, 10730037 - 10729977
Alignment:
Q  584 tgtgagaagccatcaaaagtcagaaccataagcacaatgtgaaaacaatgcttccctgcct 644  Q
    |||||||||||||||||||| |||  |||||||| | |||||||||||  |||||||||||    
T  10730037 tgtgagaagccatcaaaagttagatgcataagcaaagtgtgaaaacaacacttccctgcct 10729977  T

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Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 410 - 461
Target Start/End: Complemental strand, 10727074 - 10727023
Alignment:
Q  410 atcattatcaaaactaatgctaaagaagtaaaaacaatttatatacaatttt 461  Q
    ||||| ||||||||||||||||||||||||||||  | |||||| |||||||    
T  10727074 atcatgatcaaaactaatgctaaagaagtaaaaattaattatatgcaatttt 10727023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 262
Target Start/End: Complemental strand, 10730468 - 10730355
Alignment:
Q  152 tgaaaccaacacttccatgcctccgtgcctttgttcagactatatgtagaag---acaaaattcacaattgcaatcttaatcttaatagaccacaaatgc 248  Q
    ||||| ||||||||||   ||||| |||||||||||||||| | ||||||||   | |||| ||| | || ||||||||||||||| |   |||||||||    
T  10730468 tgaaatcaacacttcctcacctccttgcctttgttcagactgtgtgtagaaggaaaaaaaaatcagagtttcaatcttaatcttaacaatacacaaatgc 10730369  T
Q  249 aaagcatgttttag 262  Q
    ||||||| ||||||    
T  10730368 aaagcatattttag 10730355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 408 - 461
Target Start/End: Complemental strand, 10733095 - 10733042
Alignment:
Q  408 tgatcattatcaaaactaatgctaaagaagtaaaaacaatttatatacaatttt 461  Q
    ||||||| |||||||||||||||||||||| ||||| |  ||||||| ||||||    
T  10733095 tgatcatgatcaaaactaatgctaaagaagcaaaaaaagattatataaaatttt 10733042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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