View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19687_low_32 (Length: 349)
Name: NF19687_low_32
Description: NF19687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19687_low_32 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 150; Significance: 3e-79; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 153 - 319
Target Start/End: Original strand, 30519341 - 30519503
Alignment:
| Q |
153 |
actaaatagtaaggaactacactatacatatatatgtctttcaaatgtatacattgcagcttatatatgtttgtatactatttctatttctattttggta |
252 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
30519341 |
actaaatagtaaggaactacactatacatatatatgtctttcaaatgtatacattgcagcttat----gtttgtatactatttctatttctattttggta |
30519436 |
T |
|
| Q |
253 |
aggtgtcttcaatcttttatcttacttcctagatttttgtttcacagcagttttctttggtgtgtgt |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30519437 |
aggtgtcttcaatcttttatcttacttcctagatttttgtttcacagcagttttctttggtgtgtgt |
30519503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 30519192 - 30519262
Alignment:
| Q |
1 |
tgacacatatgatgaggttggaagaaagttgatctccatttggaatgattatcccataatttgttcttgct |
71 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30519192 |
tgacacatatgatgaggttggaagaaagttgatctccatttggaatgattatcccataatttgttcttgct |
30519262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University