View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19687_low_33 (Length: 347)
Name: NF19687_low_33
Description: NF19687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19687_low_33 |
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Alignment Details
Target: chr5 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 13 - 343
Target Start/End: Complemental strand, 14066473 - 14066143
Alignment:
| Q |
13 |
tcatcatccaaaaggacatacaatcccaagacttggttagtcatactcatatagcatctttactttaattgataattttgtacacttcaaaaatgcatgt |
112 |
Q |
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| T |
14066473 |
tcatcatccaaaaggacatacaatcccaagacttggttagtcatactcatatagcatctttactttaattgataattttgtacacttcaaaaatgcatgt |
14066374 |
T |
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| Q |
113 |
ttctagctaggatgtatttgaatactatttgttttatgtgtacaaaaattgatttcagatgaaaagagtcttccaaccatgcttggttttattaacacaa |
212 |
Q |
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| T |
14066373 |
ttctagctaggatgtatttgaatactatttgttttatgtgtacaaaaattgatttcagatgaaaagagtcttccaaccatgcttggttttattaacacaa |
14066274 |
T |
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| Q |
213 |
ttcaagggatgatttcagatgaccggagcaagaattgaatcttgaagtagaatttttgtttccttcatcaaaatatatagtgattttgtggaagaaatgt |
312 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
14066273 |
ttcaagggatgatttcagatgatcggagcaagaattgaatcttgaagtagaatttttgtttccttcatcaaaatatatagtgattttgtggaagaaatat |
14066174 |
T |
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| Q |
313 |
ctttattctgttataactactgcttctgtga |
343 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
14066173 |
ctttattctgttataactactgcttctgtga |
14066143 |
T |
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