View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19687_low_34 (Length: 347)

Name: NF19687_low_34
Description: NF19687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19687_low_34
NF19687_low_34
[»] chr7 (62 HSPs)
chr7 (25-198)||(21128514-21128687)
chr7 (25-197)||(22324735-22324906)
chr7 (25-198)||(19222578-19222756)
chr7 (26-150)||(40686359-40686483)
chr7 (36-198)||(48640501-48640667)
chr7 (25-197)||(27712140-27712314)
chr7 (47-197)||(9396103-9396256)
chr7 (25-148)||(28170382-28170505)
chr7 (28-198)||(16491814-16491987)
chr7 (26-197)||(40449565-40449736)
chr7 (25-149)||(16672040-16672163)
chr7 (25-149)||(17646408-17646531)
chr7 (47-149)||(2354237-2354340)
chr7 (26-138)||(16376218-16376331)
chr7 (26-126)||(32277847-32277947)
chr7 (36-138)||(41279091-41279193)
chr7 (99-197)||(35125134-35125234)
chr7 (89-197)||(45419151-45419264)
chr7 (236-293)||(21128416-21128473)
chr7 (93-198)||(34837997-34838105)
chr7 (93-197)||(21224802-21224909)
chr7 (61-133)||(24788558-24788630)
chr7 (236-293)||(32278053-32278110)
chr7 (236-288)||(19222490-19222542)
chr7 (236-288)||(45285845-45285897)
chr7 (93-198)||(18487648-18487759)
chr7 (47-149)||(11649559-11649656)
chr7 (239-288)||(1566224-1566273)
chr7 (25-78)||(18487748-18487801)
chr7 (89-149)||(4455290-4455349)
chr7 (236-288)||(22324640-22324692)
chr7 (25-77)||(34838095-34838147)
chr7 (236-288)||(35125042-35125094)
chr7 (236-288)||(40686580-40686632)
chr7 (236-288)||(45419302-45419354)
chr7 (107-149)||(2526805-2526847)
chr7 (26-150)||(11645524-11645637)
chr7 (47-103)||(16362370-16362426)
chr7 (236-288)||(40449774-40449826)
chr7 (108-197)||(18487089-18487182)
chr7 (26-81)||(21224895-21224950)
chr7 (89-138)||(46263812-46263861)
chr7 (236-288)||(21224714-21224765)
chr7 (236-288)||(34837901-34837953)
chr7 (236-288)||(48640707-48640758)
chr7 (158-197)||(2354371-2354410)
chr7 (43-77)||(1566171-1566205)
chr7 (47-81)||(2853024-2853058)
chr7 (119-197)||(9141525-9141606)
chr7 (236-277)||(27712352-27712393)
chr7 (89-130)||(45285979-45286020)
chr7 (236-288)||(18486996-18487048)
chr7 (236-288)||(18487554-18487606)
chr7 (158-198)||(45285934-45285974)
chr7 (158-197)||(48641162-48641201)
chr7 (47-81)||(4680709-4680743)
chr7 (47-81)||(12140665-12140699)
chr7 (47-81)||(22773714-22773748)
chr7 (160-197)||(2526871-2526908)
chr7 (89-138)||(4455625-4455673)
chr7 (236-277)||(9141650-9141691)
chr7 (160-197)||(40686500-40686537)
[»] chr1 (43 HSPs)
chr1 (26-197)||(51271939-51272114)
chr1 (25-197)||(44264232-44264407)
chr1 (25-197)||(1647979-1648152)
chr1 (25-198)||(12115787-12115957)
chr1 (26-198)||(47791124-47791296)
chr1 (25-197)||(3226683-3226857)
chr1 (25-150)||(16165395-16165520)
chr1 (26-198)||(38684506-38684683)
chr1 (25-149)||(52407676-52407800)
chr1 (25-147)||(45417054-45417176)
chr1 (47-198)||(42491791-42491947)
chr1 (36-198)||(21618398-21618564)
chr1 (25-198)||(18912831-18913008)
chr1 (26-145)||(25931535-25931662)
chr1 (28-122)||(6537374-6537468)
chr1 (36-138)||(46533163-46533265)
chr1 (68-138)||(23482428-23482498)
chr1 (36-138)||(41462776-41462878)
chr1 (236-288)||(44264140-44264192)
chr1 (236-288)||(45417268-45417320)
chr1 (36-138)||(11928480-11928582)
chr1 (28-81)||(6537310-6537363)
chr1 (236-293)||(12115687-12115744)
chr1 (240-288)||(3226902-3226950)
chr1 (236-288)||(4100287-4100339)
chr1 (236-288)||(38684417-38684469)
chr1 (236-287)||(1647889-1647940)
chr1 (93-150)||(4100135-4100192)
chr1 (89-138)||(41461107-41461156)
chr1 (100-149)||(43762269-43762318)
chr1 (25-81)||(4100093-4100149)
chr1 (93-147)||(39282203-39282257)
chr1 (236-293)||(47791027-47791085)
chr1 (236-288)||(21618308-21618361)
chr1 (236-288)||(51272153-51272205)
chr1 (47-81)||(318868-318902)
chr1 (47-81)||(1155870-1155904)
chr1 (47-81)||(24595472-24595506)
chr1 (76-130)||(27891980-27892034)
chr1 (47-81)||(48411778-48411812)
chr1 (236-277)||(25931747-25931788)
chr1 (47-77)||(28949702-28949732)
chr1 (47-81)||(44099419-44099453)
[»] chr4 (45 HSPs)
chr4 (25-197)||(28379501-28379676)
chr4 (26-197)||(24050084-24050260)
chr4 (25-197)||(28813616-28813792)
chr4 (25-198)||(4942095-4942270)
chr4 (26-149)||(8119053-8119176)
chr4 (25-198)||(2177529-2177705)
chr4 (26-198)||(7822003-7822182)
chr4 (30-149)||(18001759-18001878)
chr4 (26-198)||(7797754-7797931)
chr4 (40-150)||(12899918-12900028)
chr4 (30-197)||(22293380-22293551)
chr4 (25-129)||(8397101-8397205)
chr4 (36-198)||(52688917-52689084)
chr4 (26-125)||(7812605-7812704)
chr4 (47-150)||(12795688-12795791)
chr4 (47-197)||(8478709-8478861)
chr4 (66-198)||(54653156-54653288)
chr4 (74-194)||(53144340-53144465)
chr4 (236-293)||(8118910-8118967)
chr4 (236-288)||(4942003-4942055)
chr4 (236-293)||(53144507-53144564)
chr4 (236-293)||(54653329-54653386)
chr4 (236-288)||(2177435-2177487)
chr4 (236-288)||(29967528-29967580)
chr4 (89-138)||(24389744-24389793)
chr4 (97-198)||(47631920-47632024)
chr4 (236-288)||(7809910-7809962)
chr4 (236-288)||(7821909-7821961)
chr4 (236-288)||(52689122-52689175)
chr4 (236-288)||(18001967-18002019)
chr4 (236-288)||(22293291-22293343)
chr4 (236-288)||(41851833-41851885)
chr4 (26-70)||(53143214-53143258)
chr4 (62-133)||(46883559-46883629)
chr4 (89-138)||(2527214-2527263)
chr4 (89-138)||(9711462-9711511)
chr4 (158-198)||(7810001-7810041)
chr4 (159-198)||(8397245-8397284)
chr4 (238-288)||(24049993-24050043)
chr4 (47-81)||(36639608-36639642)
chr4 (161-195)||(41851780-41851814)
chr4 (47-81)||(47769214-47769248)
chr4 (236-269)||(28813542-28813575)
chr4 (168-197)||(29967621-29967650)
chr4 (49-81)||(21581029-21581061)
[»] scaffold0097 (2 HSPs)
scaffold0097 (25-197)||(13145-13317)
scaffold0097 (236-288)||(13048-13100)
[»] chr3 (31 HSPs)
chr3 (25-197)||(20876695-20876867)
chr3 (26-149)||(11523074-11523197)
chr3 (25-138)||(51654508-51654621)
chr3 (28-149)||(38887041-38887162)
chr3 (25-118)||(860479-860572)
chr3 (26-149)||(10267131-10267254)
chr3 (36-138)||(25937970-25938072)
chr3 (25-198)||(47502585-47502770)
chr3 (27-115)||(2730709-2730797)
chr3 (50-149)||(35560447-35560545)
chr3 (236-288)||(11522925-11522977)
chr3 (36-138)||(17755987-17756089)
chr3 (36-138)||(19057307-19057409)
chr3 (49-138)||(2469275-2469364)
chr3 (236-288)||(38887236-38887288)
chr3 (36-132)||(52301019-52301115)
chr3 (36-138)||(25917189-25917289)
chr3 (236-293)||(2730541-2730598)
chr3 (236-288)||(18095316-18095368)
chr3 (158-197)||(2730638-2730677)
chr3 (89-138)||(9240602-9240651)
chr3 (47-81)||(837012-837046)
chr3 (236-278)||(10266999-10267041)
chr3 (236-273)||(20876906-20876943)
chr3 (93-138)||(25716714-25716759)
chr3 (158-194)||(18095410-18095446)
chr3 (26-92)||(9856272-9856339)
chr3 (158-197)||(35560393-35560432)
chr3 (47-81)||(37760741-37760775)
chr3 (47-81)||(46452439-46452473)
chr3 (47-79)||(43017531-43017563)
[»] chr2 (38 HSPs)
chr2 (25-197)||(20709307-20709479)
chr2 (26-194)||(10128989-10129159)
chr2 (25-149)||(11657998-11658122)
chr2 (25-197)||(17370381-17370555)
chr2 (25-198)||(14336028-14336200)
chr2 (30-149)||(20641287-20641406)
chr2 (26-198)||(41995226-41995400)
chr2 (27-148)||(11736549-11736670)
chr2 (47-198)||(12898374-12898528)
chr2 (25-198)||(41326864-41327043)
chr2 (47-198)||(29550471-29550623)
chr2 (25-150)||(37130962-37131086)
chr2 (36-138)||(15256314-15256416)
chr2 (73-197)||(44256822-44256948)
chr2 (26-138)||(17930212-17930325)
chr2 (49-138)||(27351805-27351894)
chr2 (236-288)||(41995437-41995489)
chr2 (36-138)||(15253459-15253561)
chr2 (71-138)||(11131497-11131564)
chr2 (234-288)||(17370289-17370343)
chr2 (236-288)||(10129201-10129253)
chr2 (240-288)||(11736275-11736323)
chr2 (236-288)||(20709211-20709263)
chr2 (236-288)||(41326773-41326825)
chr2 (89-138)||(41075899-41075948)
chr2 (89-138)||(41076181-41076230)
chr2 (236-288)||(14336241-14336293)
chr2 (236-288)||(20641496-20641548)
chr2 (241-288)||(11657849-11657896)
chr2 (30-79)||(2132175-2132224)
chr2 (89-138)||(24129590-24129639)
chr2 (89-138)||(41075616-41075665)
chr2 (236-288)||(37131178-37131230)
chr2 (166-197)||(11657941-11657972)
chr2 (47-81)||(627842-627876)
chr2 (47-81)||(6348332-6348366)
chr2 (47-81)||(12896237-12896271)
chr2 (158-198)||(37131101-37131141)
[»] chr6 (35 HSPs)
chr6 (26-198)||(4099760-4099934)
chr6 (26-197)||(32208102-32208273)
chr6 (25-149)||(23622758-23622882)
chr6 (26-149)||(809464-809587)
chr6 (26-198)||(17203283-17203458)
chr6 (25-197)||(29201889-29202062)
chr6 (28-147)||(17906271-17906390)
chr6 (26-147)||(26831986-26832107)
chr6 (89-198)||(34294341-34294451)
chr6 (89-197)||(809315-809425)
chr6 (236-293)||(17203182-17203239)
chr6 (236-288)||(4099972-4100024)
chr6 (58-138)||(33482144-33482224)
chr6 (236-288)||(23622612-23622664)
chr6 (105-149)||(23902660-23902704)
chr6 (99-150)||(17011426-17011477)
chr6 (234-288)||(34294251-34294305)
chr6 (236-288)||(26832200-26832252)
chr6 (236-287)||(17906482-17906533)
chr6 (234-288)||(809224-809278)
chr6 (234-288)||(1393828-1393882)
chr6 (89-138)||(16799304-16799353)
chr6 (89-138)||(17073121-17073170)
chr6 (47-88)||(25068444-25068485)
chr6 (239-288)||(29201798-29201847)
chr6 (158-197)||(1393918-1393957)
chr6 (47-81)||(4810877-4810911)
chr6 (25-138)||(24222904-24223018)
chr6 (97-150)||(17080403-17080456)
chr6 (160-197)||(23622702-23622739)
chr6 (98-138)||(24223334-24223374)
chr6 (37-81)||(34294433-34294477)
chr6 (105-144)||(17080452-17080491)
chr6 (166-197)||(17906411-17906442)
chr6 (47-81)||(9829181-9829215)
[»] chr8 (30 HSPs)
chr8 (25-198)||(34947957-34948128)
chr8 (25-197)||(9389214-9389387)
chr8 (25-197)||(13797682-13797859)
chr8 (26-198)||(23960107-23960284)
chr8 (47-198)||(3990538-3990692)
chr8 (26-197)||(30206227-30206402)
chr8 (89-198)||(30437641-30437753)
chr8 (26-81)||(27853180-27853235)
chr8 (36-143)||(38294730-38294837)
chr8 (68-149)||(44014874-44014955)
chr8 (89-149)||(23086177-23086237)
chr8 (28-92)||(38111528-38111592)
chr8 (36-138)||(31249109-31249211)
chr8 (236-288)||(9389125-9389177)
chr8 (93-149)||(27853221-27853277)
chr8 (236-288)||(30437796-30437848)
chr8 (105-150)||(1276402-1276447)
chr8 (240-288)||(23086035-23086083)
chr8 (236-288)||(27853358-27853410)
chr8 (236-279)||(1198247-1198290)
chr8 (87-144)||(14683203-14683260)
chr8 (48-88)||(3458947-3458987)
chr8 (158-198)||(23828259-23828299)
chr8 (236-288)||(30206140-30206192)
chr8 (236-288)||(34947867-34947919)
chr8 (158-197)||(1198329-1198368)
chr8 (47-81)||(37197489-37197523)
chr8 (158-197)||(23831069-23831108)
chr8 (114-149)||(38111496-38111531)
chr8 (159-191)||(23838260-23838292)
[»] chr5 (40 HSPs)
chr5 (25-149)||(12441819-12441943)
chr5 (29-149)||(38110347-38110467)
chr5 (26-149)||(9487532-9487654)
chr5 (25-149)||(7127996-7128120)
chr5 (25-149)||(16305866-16305990)
chr5 (49-192)||(13104807-13104951)
chr5 (47-198)||(41092463-41092617)
chr5 (25-150)||(41511445-41511569)
chr5 (47-192)||(13034832-13034977)
chr5 (37-143)||(23141043-23141148)
chr5 (49-150)||(38004236-38004337)
chr5 (25-135)||(5398195-5398306)
chr5 (87-197)||(19322507-19322618)
chr5 (26-138)||(14854503-14854616)
chr5 (236-288)||(24326468-24326520)
chr5 (236-288)||(24350822-24350874)
chr5 (236-288)||(24351375-24351427)
chr5 (36-138)||(7779702-7779803)
chr5 (236-286)||(19122628-19122678)
chr5 (236-288)||(12442034-12442086)
chr5 (236-288)||(19322441-19322493)
chr5 (236-281)||(23140871-23140916)
chr5 (236-288)||(16305722-16305774)
chr5 (89-149)||(19122694-19122753)
chr5 (25-81)||(19322598-19322654)
chr5 (36-81)||(31486598-31486643)
chr5 (236-288)||(14165855-14165907)
chr5 (158-198)||(23140958-23140998)
chr5 (114-150)||(31487001-31487037)
chr5 (164-198)||(7127940-7127974)
chr5 (238-288)||(9487720-9487770)
chr5 (47-81)||(26522909-26522943)
chr5 (47-81)||(43394761-43394795)
chr5 (113-150)||(31486642-31486679)
chr5 (166-197)||(12441966-12441997)
chr5 (158-197)||(14165776-14165815)
chr5 (160-198)||(16305812-16305850)
chr5 (47-81)||(35159961-35159995)
chr5 (236-277)||(38110201-38110242)
chr5 (165-198)||(38110282-38110315)
[»] scaffold0013 (2 HSPs)
scaffold0013 (89-145)||(102940-102996)
scaffold0013 (158-198)||(102882-102922)
[»] scaffold0001 (2 HSPs)
scaffold0001 (236-281)||(196579-196624)
scaffold0001 (93-143)||(196283-196333)
[»] scaffold0090 (1 HSPs)
scaffold0090 (89-138)||(12282-12331)
[»] scaffold0294 (1 HSPs)
scaffold0294 (45-81)||(12344-12380)
[»] scaffold0240 (1 HSPs)
scaffold0240 (47-81)||(13517-13551)


Alignment Details
Target: chr7 (Bit Score: 117; Significance: 1e-59; HSPs: 62)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 25 - 198
Target Start/End: Complemental strand, 21128687 - 21128514
Alignment:
Q  25 gagagaaacatgtttagggcttggtatatataaccaagtttacatggaaattagggtggtcgaatttgcatgaaaattatggtattctgtttgtaaacgt 124  Q
    |||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| | ||| ||||||||||||||||| ||||||||||||||||||    
T  21128687 gagagaaacacgtttagggtttggtatatataaccaagtttacatggaaattagggtagccgagtttgcatgaaaattatgatattctgtttgtaaacgt 21128588  T
Q  125 attaaataagtgtagaaaatattgtcnnnnnnnggcaacaggataggaatgaaataaaggcatgaaattggttc 198  Q
    ||||||||||| ||||||||||||||       ||||||| |||||||||||||||||||||| ||||||||||    
T  21128587 attaaataagtatagaaaatattgtcaaaaaaaggcaacaagataggaatgaaataaaggcatcaaattggttc 21128514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 25 - 197
Target Start/End: Complemental strand, 22324906 - 22324735
Alignment:
Q  25 gagagaaacatgtttagggcttggtatatataaccaagtttacatggaaattagggtggtcgaatttgcatgaaaattatggtattctgtttgtaaacgt 124  Q
    |||||||| | |||||||||||||||||||||||||||||||||||||||||||||| | ||| |||||||| |||||| ||||||||||||||||||||    
T  22324906 gagagaaaaacgtttagggcttggtatatataaccaagtttacatggaaattagggtagccgagtttgcatggaaattagggtattctgtttgtaaacgt 22324807  T
Q  125 attaaataagtgtagaaaatattgtcnnnnnnnggcaacaggataggaatgaaataaaggcatgaaattggtt 197  Q
    ||||||||||||||||||||||| |        |||||||||| |||||||||||||||||||||||||||||    
T  22324806 attaaataagtgtagaaaatattttaaaaaaaaggcaacagga-aggaatgaaataaaggcatgaaattggtt 22324735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 25 - 198
Target Start/End: Complemental strand, 19222756 - 19222578
Alignment:
Q  25 gagagaaacatgtttagggcttggtatatataaccaagtttacatggaaattagggtggtcgaatttgcatgaaaattatggtattctgtttgtaaacgt 124  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | ||| |||||||| |||||   |||||||||||||||||||    
T  19222756 gagagaaacacgtttagggcttggtatatataaccaagtttacatggaaattagggtagccgagtttgcatggaaattggagtattctgtttgtaaacgt 19222657  T
Q  125 attaaataagtgtagaaaatattgtc-----nnnnnnnggcaacaggataggaatgaaataaaggcatgaaattggttc 198  Q
    ||||||||||||||||||||||||||            ||||||||||||| |||||||||||||||||||||||||||    
T  19222656 attaaataagtgtagaaaatattgtcaaaaaaaaaaaaggcaacaggatagtaatgaaataaaggcatgaaattggttc 19222578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 26 - 150
Target Start/End: Original strand, 40686359 - 40686483
Alignment:
Q  26 agagaaacatgtttagggcttggtatatataaccaagtttacatggaaattagggtggtcgaatttgcatgaaaattatggtattctgtttgtaaacgta 125  Q
    ||||||||| |||||||||||||||||||||||||||||||||| ||||||| ||||| ||| ||||||||||||||| |||||||||||||||||||||    
T  40686359 agagaaacacgtttagggcttggtatatataaccaagtttacatagaaattatggtggccgagtttgcatgaaaattagggtattctgtttgtaaacgta 40686458  T
Q  126 ttaaataagtgtagaaaatattgtc 150  Q
    |||||||||||||||||||||||||    
T  40686459 ttaaataagtgtagaaaatattgtc 40686483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 36 - 198
Target Start/End: Original strand, 48640501 - 48640667
Alignment:
Q  36 gtttagggcttggtatatataaccaagtttacatggaaattagggtggtcgaatttgcatgaaaattatggtattctgtttgtaaacgtattaaataagt 135  Q
    ||||||||||||||||||||||||||||||||||| |||||||||| | ||| ||||||||||||||||| |||||| |||||||| |||||||||||||    
T  48640501 gtttagggcttggtatatataaccaagtttacatgaaaattagggtagccgagtttgcatgaaaattatgatattctatttgtaaatgtattaaataagt 48640600  T
Q  136 gtagaaaatattgtc----nnnnnnnggcaacaggataggaatgaaataaaggcatgaaattggttc 198  Q
    |||||||||||| ||           |||||||||||||||||||||||||||||||||||||||||    
T  48640601 gtagaaaatattatcaaaaataaaaaggcaacaggataggaatgaaataaaggcatgaaattggttc 48640667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 25 - 197
Target Start/End: Original strand, 27712140 - 27712314
Alignment:
Q  25 gagagaaacatgtttagggcttggtatatataaccaagtttacatggaaattagggtggtcgaatttgcatgaaaattatggtattctgtttgtaaacgt 124  Q
    |||||||||| ||||||||||||||||||||||||||||||||||| |||||||| | | ||| |||||||| |||||| |||||| ||||| ||||| |    
T  27712140 gagagaaacacgtttagggcttggtatatataaccaagtttacatgaaaattaggttagccgagtttgcatggaaattagggtattttgtttctaaacat 27712239  T
Q  125 attaaataagtgtagaaaatattgtc--nnnnnnnggcaacaggataggaatgaaataaaggcatgaaattggtt 197  Q
    ||||||||||||||||||||||||||         ||||||| ||||||||||||||||||||||||||||||||    
T  27712240 attaaataagtgtagaaaatattgtcaaaaaaaaaggcaacaagataggaatgaaataaaggcatgaaattggtt 27712314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 47 - 197
Target Start/End: Complemental strand, 9396256 - 9396103
Alignment:
Q  47 ggtatatataaccaagtttacatggaaattagggtggtcgaatttgcatgaaaattatggtattctgtttgtaaacgtattaaataagtgtagaaaatat 146  Q
    ||||||||||||||||||||||||||||||||||| | ||| ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||    
T  9396256 ggtatatataaccaagtttacatggaaattagggtagccgagtttgcatgaaaattagggtattctatttgtaaacgtattaaataagtgtagaaaatat 9396157  T
Q  147 tgtc---nnnnnnnggcaacaggataggaatgaaataaaggcatgaaattggtt 197  Q
    ||||          ||||||| |||||||||||||||||||||| |||||||||    
T  9396156 tgtcaagaaaagaaggcaacatgataggaatgaaataaaggcataaaattggtt 9396103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 25 - 148
Target Start/End: Complemental strand, 28170505 - 28170382
Alignment:
Q  25 gagagaaacatgtttagggcttggtatatataaccaagtttacatggaaattagggtggtcgaatttgcatgaaaattatggtattctgtttgtaaacgt 124  Q
    |||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||| | ||| |||||||||||  || ||||||||||||||||||||    
T  28170505 gagaaaaacacgtttagggcttggtatatataacgaagtttacatggaaattagggtagccgagtttgcatgaaatctagggtattctgtttgtaaacgt 28170406  T
Q  125 attaaataagtgtagaaaatattg 148  Q
    ||||||||||||||||||||||||    
T  28170405 attaaataagtgtagaaaatattg 28170382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 28 - 198
Target Start/End: Original strand, 16491814 - 16491987
Alignment:
Q  28 agaaacatgtttagggcttggtatatataaccaagtttacatggaaattagggtggtcgaatttgcatgaaaattatggtattctgtttgtaaacgtatt 127  Q
    |||||||  ||||||||||||||||||||| ||||||||||||||||||||||| | ||| |||||||| |||||| ||||||||||||||||| |||||    
T  16491814 agaaacacctttagggcttggtatatataatcaagtttacatggaaattagggtagccgagtttgcatggaaattagggtattctgtttgtaaatgtatt 16491913  T
Q  128 aaataagtgtagaaaatattgt---cnnnnnnnggcaacaggataggaatgaaataaaggcatgaaattggttc 198  Q
    |||||||||||||||||||| |           ||||||| |||||||||||||||| ||||||||||||||||    
T  16491914 aaataagtgtagaaaatattctaaaaagaaaaaggcaacaagataggaatgaaataagggcatgaaattggttc 16491987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 26 - 197
Target Start/End: Original strand, 40449565 - 40449736
Alignment:
Q  26 agagaaacatgtttagggcttggtatatataaccaagtttacatggaaattagggtggtcgaatttgcatgaaaattatggtattctgtttgtaaacgta 125  Q
    ||||||||| ||||| |||| |||||| |||||||||||||||||||||||||||| | ||| |||||||| | |||| ||||||||| | |||||||||    
T  40449565 agagaaacacgtttaaggctcggtataaataaccaagtttacatggaaattagggtagccgagtttgcatggatattagggtattctgctcgtaaacgta 40449664  T
Q  126 ttaaataagtgtagaaaatattgtcnnnnnnnggcaacaggataggaatgaaataaaggcatgaaattggtt 197  Q
    | ||||||||||||| |||||| |        ||||||| ||||||||||||||||||||||||||||||||    
T  40449665 taaaataagtgtagacaatattataaaaaaaaggcaacatgataggaatgaaataaaggcatgaaattggtt 40449736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 25 - 149
Target Start/End: Complemental strand, 16672163 - 16672040
Alignment:
Q  25 gagagaaacatgtttagggcttggtatatataaccaagtttacatggaaattagggtggtcgaatttgcatgaaaattatggtattctgtttgtaaacgt 124  Q
    ||||||||||  ||||||||||| ||||||||||||||||||||||||||||||||| | ||| |||| ||| |||||| |||||| ||||||||||| |    
T  16672163 gagagaaacacatttagggcttg-tatatataaccaagtttacatggaaattagggtagccgagtttgtatggaaattagggtattatgtttgtaaacat 16672065  T
Q  125 attaaataagtgtagaaaatattgt 149  Q
    |||||||||||||||||||||||||    
T  16672064 attaaataagtgtagaaaatattgt 16672040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 25 - 149
Target Start/End: Complemental strand, 17646531 - 17646408
Alignment:
Q  25 gagagaaacatgtttagggcttggtatatataaccaagtttacatggaaattagggtggtcgaatttgcatgaaaattatggtattctgtttgtaaacgt 124  Q
    ||||||||||  ||||||||||| ||||||||||||||||||||||||||||||||| | ||| |||| ||| |||||| |||||| ||||||||||| |    
T  17646531 gagagaaacacatttagggcttg-tatatataaccaagtttacatggaaattagggtagccgagtttgtatggaaattagggtattatgtttgtaaacat 17646433  T
Q  125 attaaataagtgtagaaaatattgt 149  Q
    |||||||||||||||||||||||||    
T  17646432 attaaataagtgtagaaaatattgt 17646408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 47 - 149
Target Start/End: Original strand, 2354237 - 2354340
Alignment:
Q  47 ggtatatataaccaagtttacatggaaattagggtggtcgaatttgcatgaaaattatggtattctgtttgt-aaacgtattaaataagtgtagaaaata 145  Q
    |||||||||||||||||||| |||||||||||||| | ||| ||||||||||||||| |||||||||||| | |||||||||||||||||||||||||||    
T  2354237 ggtatatataaccaagtttatatggaaattagggtagccgagtttgcatgaaaattagggtattctgtttttaaaacgtattaaataagtgtagaaaata 2354336  T
Q  146 ttgt 149  Q
    ||||    
T  2354337 ttgt 2354340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 26 - 138
Target Start/End: Original strand, 16376218 - 16376331
Alignment:
Q  26 agagaaacatg-tttagggcttggtatatataaccaagtttacatggaaattagggtggtcgaatttgcatgaaaattatggtattctgtttgtaaacgt 124  Q
    ||||||||||| ||||||| ||| |||||||| || ||||| ||||||||||||||||| ||| |||||||| |||||| ||||||||||||||||||||    
T  16376218 agagaaacatggtttagggtttgatatatatagccgagtttgcatggaaattagggtggccgagtttgcatggaaattagggtattctgtttgtaaacgt 16376317  T
Q  125 attaaataagtgta 138  Q
    ||||||||||||||    
T  16376318 attaaataagtgta 16376331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 26 - 126
Target Start/End: Original strand, 32277847 - 32277947
Alignment:
Q  26 agagaaacatgtttagggcttggtatatataaccaagtttacatggaaattagggtggtcgaatttgcatgaaaattatggtattctgtttgtaaacgta 125  Q
    ||||||||| ||||| |||||| ||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||| |||| |||||||||    
T  32277847 agagaaacacgtttatggcttgatatatataaccaagtttacatggaaattagggtagccgagtttgcatgaaaattatggtattatgttcgtaaacgta 32277946  T
Q  126 t 126  Q
    |    
T  32277947 t 32277947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 36 - 138
Target Start/End: Complemental strand, 41279193 - 41279091
Alignment:
Q  36 gtttagggcttggtatatataaccaagtttacatggaaattagggtggtcgaatttgcatgaaaattatggtattctgtttgtaaacgtattaaataagt 135  Q
    |||||||| ||| |||||||| || ||||| ||||||||||||||| | ||| |||||||| |||||| ||||||||||||||||| |||||||||||||    
T  41279193 gtttagggtttgctatatatagccgagtttgcatggaaattagggtagccgagtttgcatggaaattagggtattctgtttgtaaatgtattaaataagt 41279094  T
Q  136 gta 138  Q
    |||    
T  41279093 gta 41279091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 99 - 197
Target Start/End: Complemental strand, 35125234 - 35125134
Alignment:
Q  99 aattatggtattctgtttgtaaacgtattaaataagtgtagaaaatattgtc--nnnnnnnggcaacaggataggaatgaaataaaggcatgaaattggt 196  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||         || |||||| |||||||||||||||||||||||||||||    
T  35125234 aattagggtattctgtttgtaaacgtattaaataagtgtagaaaatattgtcaaaaaaaaaggtaacagggtaggaatgaaataaaggcatgaaattggt 35125135  T
Q  197 t 197  Q
    |    
T  35125134 t 35125134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 89 - 197
Target Start/End: Original strand, 45419151 - 45419264
Alignment:
Q  89 tttgcatgaaaattatggtattctgtttgtaaacgtattaaataagtgtagaaaatattgtc-----nnnnnnnggcaacaggataggaatgaaataaag 183  Q
    ||||||||||||||| |||||| |||||||||||||||||||||||||||||||| ||||||            ||||||| ||||||||||||||||||    
T  45419151 tttgcatgaaaattagggtattttgtttgtaaacgtattaaataagtgtagaaaaaattgtcaaaaacaaaaaaggcaacaagataggaatgaaataaag 45419250  T
Q  184 gcatgaaattggtt 197  Q
    ||||||||||||||    
T  45419251 gcatgaaattggtt 45419264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 236 - 293
Target Start/End: Complemental strand, 21128473 - 21128416
Alignment:
Q  236 atgaaattagtgcgatgaatttttctggtattgtgtacaaaatattgtcaaaatgaaa 293  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  21128473 atgaaattagtgcgatgaatttttctggtattgtgtacaaaatattgtcaaaaagaaa 21128416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 93 - 198
Target Start/End: Complemental strand, 34838105 - 34837997
Alignment:
Q  93 catgaaaattatggtattctgtttgtaaacgtattaaataagtgtagaaaatattgtc---nnnnnnnggcaacaggataggaatgaaataaaggcatga 189  Q
    |||| |||||||| |||| |||||||||||||||||||||||||||||||||||||||          ||||||||||||  ||||||||||||||||||    
T  34838105 catggaaattatgatattttgtttgtaaacgtattaaataagtgtagaaaatattgtcaaaaaaaaaaggcaacaggatataaatgaaataaaggcatga 34838006  T
Q  190 aattggttc 198  Q
    |||||||||    
T  34838005 aattggttc 34837997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 93 - 197
Target Start/End: Complemental strand, 21224909 - 21224802
Alignment:
Q  93 catgaaaattatggtattctgtttgtaaacgtattaaataagtgtagaaaatattgtc---nnnnnnnggcaacaggataggaatgaaataaaggcatga 189  Q
    |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||          | ||||| |||||||||||||||||| |||||    
T  21224909 catggaaattagggtattctgtttgtaaacgtattaaataagtgtagaaaatattgtcaaaaaaaaaagacaacatgataggaatgaaataaagacatga 21224810  T
Q  190 aattggtt 197  Q
    ||||||||    
T  21224809 aattggtt 21224802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 61 - 133
Target Start/End: Original strand, 24788558 - 24788630
Alignment:
Q  61 agtttacatggaaattagggtggtcgaatttgcatgaaaattatggtattctgtttgtaaacgtattaaataa 133  Q
    ||||| ||||||||||||||| | ||| ||||||||||||||| |||||||||||||||||||||||||||||    
T  24788558 agtttgcatggaaattagggtagccgagtttgcatgaaaattagggtattctgtttgtaaacgtattaaataa 24788630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 236 - 293
Target Start/End: Original strand, 32278053 - 32278110
Alignment:
Q  236 atgaaattagtgcgatgaatttttctggtattgtgtacaaaatattgtcaaaatgaaa 293  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||    
T  32278053 atgaaattagtgcgatgaatttttctagtattgtgtacaaaatattgtcaaaaagaaa 32278110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 236 - 288
Target Start/End: Complemental strand, 19222542 - 19222490
Alignment:
Q  236 atgaaattagtgcgatgaatttttctggtattgtgtacaaaatattgtcaaaa 288  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  19222542 atgaaattagtgcgatgaatttttctagtattgtgtacaaaatattgtcaaaa 19222490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 236 - 288
Target Start/End: Complemental strand, 45285897 - 45285845
Alignment:
Q  236 atgaaattagtgcgatgaatttttctggtattgtgtacaaaatattgtcaaaa 288  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  45285897 atgaaattagtgcgatgaatttttctagtattgtgtacaaaatattgtcaaaa 45285845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 93 - 198
Target Start/End: Complemental strand, 18487759 - 18487648
Alignment:
Q  93 catgaaaattatggtattctgtttgtaaacgtattaaataagtgtagaaaatattgtc------nnnnnnnggcaacaggataggaatgaaataaaggca 186  Q
    |||| ||||||  ||||| |||||||||||||||||||||||||||||||||||||||             ||||||| |||||||||||||||||||||    
T  18487759 catggaaattagagtattttgtttgtaaacgtattaaataagtgtagaaaatattgtcaaaaaaaaaaaaaggcaacatgataggaatgaaataaaggca 18487660  T
Q  187 tgaaattggttc 198  Q
    ||||||||||||    
T  18487659 tgaaattggttc 18487648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 47 - 149
Target Start/End: Original strand, 11649559 - 11649656
Alignment:
Q  47 ggtatatataaccaagtttacatggaaattagggtggtcgaatttgcatgaaaattatggtattctgtttgtaaacgtattaaataagtgtagaaaatat 146  Q
    |||||||||||| |||||||||||||||||||      ||| |||||||| |||||| | |||||| |||||||||||||||||||||| || |||||||    
T  11649559 ggtatatataactaagtttacatggaaattagc-----cgagtttgcatggaaattaagatattctatttgtaaacgtattaaataagtatacaaaatat 11649653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 239 - 288
Target Start/End: Original strand, 1566224 - 1566273
Alignment:
Q  239 aaattagtgcgatgaatttttctggtattgtgtacaaaatattgtcaaaa 288  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  1566224 aaattagtgcgatgaatttttctagtattgtgtacaaaatattgtcaaaa 1566273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 25 - 78
Target Start/End: Complemental strand, 18487801 - 18487748
Alignment:
Q  25 gagagaaacatgtttagggcttggtatatataaccaagtttacatggaaattag 78  Q
    |||||||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  18487801 gagagaaacaagtttagggcttggtatatacaaccaagtttacatggaaattag 18487748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 89 - 149
Target Start/End: Complemental strand, 4455349 - 4455290
Alignment:
Q  89 tttgcatgaaaattatggtattctgtttgtaaacgtattaaataagtgtagaaaatattgt 149  Q
    ||||||||||||||| ||||| |||||||||||||||||||||||||||| ||||||||||    
T  4455349 tttgcatgaaaattagggtat-ctgtttgtaaacgtattaaataagtgtacaaaatattgt 4455290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 236 - 288
Target Start/End: Complemental strand, 22324692 - 22324640
Alignment:
Q  236 atgaaattagtgcgatgaatttttctggtattgtgtacaaaatattgtcaaaa 288  Q
    |||||||||||||||||||||||||| |||||||||||| |||||||||||||    
T  22324692 atgaaattagtgcgatgaatttttctagtattgtgtacataatattgtcaaaa 22324640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 25 - 77
Target Start/End: Complemental strand, 34838147 - 34838095
Alignment:
Q  25 gagagaaacatgtttagggcttggtatatataaccaagtttacatggaaatta 77  Q
    |||||||||| |||||||||||||||| |||||||||||||||||||||||||    
T  34838147 gagagaaacacgtttagggcttggtatgtataaccaagtttacatggaaatta 34838095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 236 - 288
Target Start/End: Complemental strand, 35125094 - 35125042
Alignment:
Q  236 atgaaattagtgcgatgaatttttctggtattgtgtacaaaatattgtcaaaa 288  Q
    |||||||||||||||||||||||||| |||||||||| |||||||||||||||    
T  35125094 atgaaattagtgcgatgaatttttctagtattgtgtagaaaatattgtcaaaa 35125042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 236 - 288
Target Start/End: Original strand, 40686580 - 40686632
Alignment:
Q  236 atgaaattagtgcgatgaatttttctggtattgtgtacaaaatattgtcaaaa 288  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||| ||||    
T  40686580 atgaaattagtgcgatgaatttttctagtattgtgtacaaaatattgttaaaa 40686632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 236 - 288
Target Start/End: Original strand, 45419302 - 45419354
Alignment:
Q  236 atgaaattagtgcgatgaatttttctggtattgtgtacaaaatattgtcaaaa 288  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||| ||||    
T  45419302 atgaaattagtgcgatgaatttttctagtattgtgtacaaaatattgtaaaaa 45419354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 107 - 149
Target Start/End: Original strand, 2526805 - 2526847
Alignment:
Q  107 tattctgtttgtaaacgtattaaataagtgtagaaaatattgt 149  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  2526805 tattctgtttgtaaacgtattaaataagtgtagaaaatattgt 2526847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 26 - 150
Target Start/End: Original strand, 11645524 - 11645637
Alignment:
Q  26 agagaaacatgtttagggcttggtatatataaccaagtttacatggaaattagggtggtcgaatttgcatgaaaattatggtattctgtttgtaaacgta 125  Q
    ||||||||| ||||||||||| |||||||||||||||||||           |||| | |||  ||||||||| |||| |  ||||||||||||||||||    
T  11645524 agagaaacacgtttagggctttgtatatataaccaagttta-----------gggtagccgagcttgcatgaagattaggaaattctgtttgtaaacgta 11645612  T
Q  126 ttaaataagtgtagaaaatattgtc 150  Q
    ||||| |||||||||||||||||||    
T  11645613 ttaaacaagtgtagaaaatattgtc 11645637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 47 - 103
Target Start/End: Original strand, 16362370 - 16362426
Alignment:
Q  47 ggtatatataaccaagtttacatggaaattagggtggtcgaatttgcatgaaaatta 103  Q
    ||||||||||||||||||||||||||||||||||| ||||| |||| ||| ||||||    
T  16362370 ggtatatataaccaagtttacatggaaattagggtagtcgagtttgtatggaaatta 16362426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 236 - 288
Target Start/End: Original strand, 40449774 - 40449826
Alignment:
Q  236 atgaaattagtgcgatgaatttttctggtattgtgtacaaaatattgtcaaaa 288  Q
    |||||||| ||||||||||||||||| ||||||||||||||||||||| ||||    
T  40449774 atgaaatttgtgcgatgaatttttctagtattgtgtacaaaatattgtaaaaa 40449826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 108 - 197
Target Start/End: Complemental strand, 18487182 - 18487089
Alignment:
Q  108 attctgtttgtaaacgtattaaataagtgtagaaaatattgtc----nnnnnnnggcaacaggataggaatgaaataaaggcatgaaattggtt 197  Q
    |||||||||||||| |||||||||||||||| |||||||||||           || |||| ||||||||||||||||||||||||||||||||    
T  18487182 attctgtttgtaaaagtattaaataagtgtaaaaaatattgtcaaaaaaaaaaaggaaacatgataggaatgaaataaaggcatgaaattggtt 18487089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 26 - 81
Target Start/End: Complemental strand, 21224950 - 21224895
Alignment:
Q  26 agagaaacatgtttagggcttggtatatataaccaagtttacatggaaattagggt 81  Q
    ||||||||| |||||||| ||| |||||||||| ||||||||||||||||||||||    
T  21224950 agagaaacacgtttagggtttgatatatataacaaagtttacatggaaattagggt 21224895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 89 - 138
Target Start/End: Original strand, 46263812 - 46263861
Alignment:
Q  89 tttgcatgaaaattatggtattctgtttgtaaacgtattaaataagtgta 138  Q
    ||||||||||| ||| |||||| |||||||||||||||||||||||||||    
T  46263812 tttgcatgaaacttagggtattttgtttgtaaacgtattaaataagtgta 46263861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #43
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 236 - 288
Target Start/End: Complemental strand, 21224765 - 21224714
Alignment:
Q  236 atgaaattagtgcgatgaatttttctggtattgtgtacaaaatattgtcaaaa 288  Q
    |||||||||||||||||| ||||||| ||||||||||||||||||||| ||||    
T  21224765 atgaaattagtgcgatga-tttttctagtattgtgtacaaaatattgtaaaaa 21224714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #44
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 236 - 288
Target Start/End: Complemental strand, 34837953 - 34837901
Alignment:
Q  236 atgaaattagtgcgatgaatttttctggtattgtgtacaaaatattgtcaaaa 288  Q
    ||||||||| |||||||||||||||| ||| ||||||||||||||||| ||||    
T  34837953 atgaaattactgcgatgaatttttctagtactgtgtacaaaatattgtaaaaa 34837901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #45
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 236 - 288
Target Start/End: Original strand, 48640707 - 48640758
Alignment:
Q  236 atgaaattagtgcgatgaatttttctggtattgtgtacaaaatattgtcaaaa 288  Q
    ||||||||||||||||||||||| || ||||||| ||||||||||||||||||    
T  48640707 atgaaattagtgcgatgaatttt-ctagtattgtctacaaaatattgtcaaaa 48640758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #46
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 158 - 197
Target Start/End: Original strand, 2354371 - 2354410
Alignment:
Q  158 ggcaacaggataggaatgaaataaaggcatgaaattggtt 197  Q
    ||||||| ||||||||||||||||||||||||||||||||    
T  2354371 ggcaacatgataggaatgaaataaaggcatgaaattggtt 2354410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #47
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 43 - 77
Target Start/End: Original strand, 1566171 - 1566205
Alignment:
Q  43 gcttggtatatataaccaagtttacatggaaatta 77  Q
    |||||||||||||||||||||||||||||||||||    
T  1566171 gcttggtatatataaccaagtttacatggaaatta 1566205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #48
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 81
Target Start/End: Original strand, 2853024 - 2853058
Alignment:
Q  47 ggtatatataaccaagtttacatggaaattagggt 81  Q
    |||||||||||||||||||||||||||||||||||    
T  2853024 ggtatatataaccaagtttacatggaaattagggt 2853058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #49
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 119 - 197
Target Start/End: Original strand, 9141525 - 9141606
Alignment:
Q  119 aaacgtattaaataagtgtagaaaatattgtcnnnnnnn---ggcaacaggataggaatgaaataaaggcatgaaattggtt 197  Q
    |||||||||||||||||||||||||||||||           ||||||| |||||||||||||||||||||| |||||||||    
T  9141525 aaacgtattaaataagtgtagaaaatattgtgaagaaaaaaaggcaacatgataggaatgaaataaaggcataaaattggtt 9141606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #50
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 236 - 277
Target Start/End: Original strand, 27712352 - 27712393
Alignment:
Q  236 atgaaattagtgcgatgaatttttctggtattgtgtacaaaa 277  Q
    ||||||||||||||| |||||||||| |||||||||||||||    
T  27712352 atgaaattagtgcgacgaatttttctagtattgtgtacaaaa 27712393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #51
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 89 - 130
Target Start/End: Complemental strand, 45286020 - 45285979
Alignment:
Q  89 tttgcatgaaaattatggtattctgtttgtaaacgtattaaa 130  Q
    ||||||||||||||| |||||| |||||||||||||||||||    
T  45286020 tttgcatgaaaattagggtattttgtttgtaaacgtattaaa 45285979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #52
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 236 - 288
Target Start/End: Complemental strand, 18487048 - 18486996
Alignment:
Q  236 atgaaattagtgcgatgaatttttctggtattgtgtacaaaatattgtcaaaa 288  Q
    ||||||||||||  |||| |||| || ||||||||||||||||||||||||||    
T  18487048 atgaaattagtgtaatgatttttcctagtattgtgtacaaaatattgtcaaaa 18486996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #53
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 236 - 288
Target Start/End: Complemental strand, 18487606 - 18487554
Alignment:
Q  236 atgaaattagtgcgatgaatttttctggtattgtgtacaaaatattgtcaaaa 288  Q
    ||||||||||||  |||| |||| || ||||||||||||||||||||||||||    
T  18487606 atgaaattagtgtaatgatttttcctagtattgtgtacaaaatattgtcaaaa 18487554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #54
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 158 - 198
Target Start/End: Complemental strand, 45285974 - 45285934
Alignment:
Q  158 ggcaacaggataggaatgaaataaaggcatgaaattggttc 198  Q
    ||||||| |||| ||||||||||||||||||||||||||||    
T  45285974 ggcaacatgataagaatgaaataaaggcatgaaattggttc 45285934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #55
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 158 - 197
Target Start/End: Original strand, 48641162 - 48641201
Alignment:
Q  158 ggcaacaggataggaatgaaataaaggcatgaaattggtt 197  Q
    |||||||||||| |||||||||||||||||| ||||||||    
T  48641162 ggcaacaggataagaatgaaataaaggcatgcaattggtt 48641201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #56
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 81
Target Start/End: Original strand, 4680709 - 4680743
Alignment:
Q  47 ggtatatataaccaagtttacatggaaattagggt 81  Q
    |||||||||||| ||||||||||||||||||||||    
T  4680709 ggtatatataactaagtttacatggaaattagggt 4680743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #57
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 81
Target Start/End: Original strand, 12140665 - 12140699
Alignment:
Q  47 ggtatatataaccaagtttacatggaaattagggt 81  Q
    ||||||||||||||||||||||| |||||||||||    
T  12140665 ggtatatataaccaagtttacatagaaattagggt 12140699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #58
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 81
Target Start/End: Original strand, 22773714 - 22773748
Alignment:
Q  47 ggtatatataaccaagtttacatggaaattagggt 81  Q
    ||||||||||||||||||||||| |||||||||||    
T  22773714 ggtatatataaccaagtttacatagaaattagggt 22773748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #59
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 197
Target Start/End: Original strand, 2526871 - 2526908
Alignment:
Q  160 caacaggataggaatgaaataaaggcatgaaattggtt 197  Q
    ||||| ||||| ||||||||||||||||||||||||||    
T  2526871 caacatgatagaaatgaaataaaggcatgaaattggtt 2526908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #60
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 138
Target Start/End: Complemental strand, 4455673 - 4455625
Alignment:
Q  89 tttgcatgaaaattatggtattctgtttgtaaacgtattaaataagtgta 138  Q
    ||||||||||||||  | ||||||||||||||||||||||||||| ||||    
T  4455673 tttgcatgaaaattg-gatattctgtttgtaaacgtattaaataaatgta 4455625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #61
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 277
Target Start/End: Original strand, 9141650 - 9141691
Alignment:
Q  236 atgaaattagtgcgatgaatttttctggtattgtgtacaaaa 277  Q
    |||||||||||| ||||||||||||| ||| |||||||||||    
T  9141650 atgaaattagtgggatgaatttttctagtactgtgtacaaaa 9141691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #62
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 197
Target Start/End: Original strand, 40686500 - 40686537
Alignment:
Q  160 caacaggataggaatgaaataaaggcatgaaattggtt 197  Q
    ||||| |||||||||||||||||| |||||||||||||    
T  40686500 caacatgataggaatgaaataaagacatgaaattggtt 40686537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 110; Significance: 2e-55; HSPs: 43)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 26 - 197
Target Start/End: Original strand, 51271939 - 51272114
Alignment:
Q  26 agagaaacatgtttagggcttggtatatataaccaagtttacatggaaattagggtggtcgaatttgcatgaaaattatggtattctgtttgtaaacgta 125  Q
    |||||||||  ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||| |||||||||||||||||||||    
T  51271939 agagaaacacatttagggcttggtatatataaccaagtttacatggaaattagggtagtcgagtttgcatggaaattaaggtattctgtttgtaaacgta 51272038  T
Q  126 ttaaataagtgtagaaaatattgtc----nnnnnnnggcaacaggataggaatgaaataaaggcatgaaattggtt 197  Q
    ||||||||||| |||||||||||||           ||||||||||||||||||||||||||||||||||||||||    
T  51272039 ttaaataagtgaagaaaatattgtcaaaaaagaaaaggcaacaggataggaatgaaataaaggcatgaaattggtt 51272114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 25 - 197
Target Start/End: Complemental strand, 44264407 - 44264232
Alignment:
Q  25 gagagaaacatgtttagggcttggtatatataaccaagtttacatggaaattagggtggtcgaatttgcatgaaaattatggtattctgtttgtaaacgt 124  Q
    |||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| | ||| |||||||| |||||||||||||| ||||||||||||    
T  44264407 gagagaaacacgtttaaggcttggtatatataaccaagtttacatggaaattagggtagccgagtttgcatggaaattatggtattcagtttgtaaacgt 44264308  T
Q  125 attaaataagtgtagaaaatattgt---cnnnnnnnggcaacaggataggaatgaaataaaggcatgaaattggtt 197  Q
    |||||||||||||||||||||||||           ||||||||||||||||||||||||||||||||||||||||    
T  44264307 attaaataagtgtagaaaatattgtaaaaaaaaagaggcaacaggataggaatgaaataaaggcatgaaattggtt 44264232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 25 - 197
Target Start/End: Complemental strand, 1648152 - 1647979
Alignment:
Q  25 gagagaaacatgtttagggcttggtatatataaccaagtttacatggaaattagggtggtcgaatttgcatgaaaattatggtattctgtttgtaaacgt 124  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | ||| |||||||| |||||| |||||| |||||||||||||    
T  1648152 gagagaaacacgtttagggcttggtatatataaccaagtttacatggaaattagggtagccgagtttgcatggaaattagggtattttgtttgtaaacgt 1648053  T
Q  125 attaaataagtgtagaaaatattgt-cnnnnnnnggcaacaggataggaatgaaataaaggcatgaaattggtt 197  Q
    |||||||||||| ||||||||||||         ||||||| ||||||||||||||||||||||||||||||||    
T  1648052 attaaataagtgcagaaaatattgtaaaaaaaaaggcaacatgataggaatgaaataaaggcatgaaattggtt 1647979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 25 - 198
Target Start/End: Complemental strand, 12115957 - 12115787
Alignment:
Q  25 gagagaaacatgtttagggcttggtatatataaccaagtttacatggaaattagggtggtcgaatttgcatgaaaattatggtattctgtttgtaaacgt 124  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | ||| |||||||| |||||| |||||| |||||||||||||    
T  12115957 gagagaaacacgtttagggcttggtatatataaccaagtttacatggaaattagggtagccgagtttgcatggaaattagggtattttgtttgtaaacgt 12115858  T
Q  125 attaaataagtgtagaaaatattgtcnnnnnnnggcaacaggataggaatgaaataaaggcatgaaattggttc 198  Q
    ||||||||||||||||||||||| ||       ||||||  | || ||||||||||||||||||||||||||||    
T  12115857 attaaataagtgtagaaaatattatc-aaaaaaggcaac--ggtaagaatgaaataaaggcatgaaattggttc 12115787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 26 - 198
Target Start/End: Complemental strand, 47791296 - 47791124
Alignment:
Q  26 agagaaacatgtttagggcttggtatatataaccaagtttacatggaaattagggtggtcgaatttgcatgaaaattatggtattctgtttgtaaacgta 125  Q
    ||||||||| ||||||||||||||||||||||| || ||||||||||||||||||  | | | |||||||| |||||| |||||||| ||||||||||||    
T  47791296 agagaaacacgtttagggcttggtatatataacaaaatttacatggaaattaggggagccaagtttgcatggaaattagggtattctatttgtaaacgta 47791197  T
Q  126 ttaaataagtgtagaaaatattgtcnnnnnnnggcaacaggataggaatgaaataaaggcatgaaattggttc 198  Q
    |||||||| ||||||||||||||||       ||||||| ||||| |||||||||||||||||||||||||||    
T  47791196 ttaaataaatgtagaaaatattgtcaaaaaaaggcaacatgatagaaatgaaataaaggcatgaaattggttc 47791124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 25 - 197
Target Start/End: Original strand, 3226683 - 3226857
Alignment:
Q  25 gagagaaacatgtttagggcttggtatatataaccaagtttacatggaaattagggtggtcgaatttgcatgaaaattatggtattctgtttgtaaacgt 124  Q
    ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||| | |||| |||||||||| ||    
T  3226683 gagagaaacacatttagggcttggtatatataaccaagtttacatggaaattagggtagtcgagtttgcatggaaattaggatattttgtttgtaaatgt 3226782  T
Q  125 attaaataagtgtagaaaatattgtc--nnnnnnnggcaacaggataggaatgaaataaaggcatgaaattggtt 197  Q
    |||||| |||| ||||||||||||||         |||||||| |||||||||||||||||||||||||||||||    
T  3226783 attaaaaaagtttagaaaatattgtcaaaaaaaaaggcaacagaataggaatgaaataaaggcatgaaattggtt 3226857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 25 - 150
Target Start/End: Original strand, 16165395 - 16165520
Alignment:
Q  25 gagagaaacatgtttagggcttggtatatataaccaagtttacatggaaattagggtggtcgaatttgcatgaaaattatggtattctgtttgtaaacgt 124  Q
    |||| |||||||||||||||||||||||||||| ||||||||||||||||||| ||| | |||||||||||| |||||| | ||||||||||||||||||    
T  16165395 gagaaaaacatgtttagggcttggtatatataatcaagtttacatggaaattacggtagccgaatttgcatggaaattaggatattctgtttgtaaacgt 16165494  T
Q  125 attaaataagtgtagaaaatattgtc 150  Q
    ||||||||||||||||||||||||||    
T  16165495 attaaataagtgtagaaaatattgtc 16165520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 26 - 198
Target Start/End: Complemental strand, 38684683 - 38684506
Alignment:
Q  26 agagaaacatgtttagggcttggtatatataaccaagtttacatggaaattagggtggtcgaatttgcatgaaaattatggtattctgtttgtaaacgta 125  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  || ||||||||  ||||||  |||||||||||||||| ||    
T  38684683 agagaaacatgtttagggcttggtatatataaccaagtttacatggaaattagggtagctgagtttgcatgggaattataatattctgtttgtaaacata 38684584  T
Q  126 ttaaataagtgtagaaaatattgtc-----nnnnnnnggcaacaggataggaatgaaataaaggcatgaaattggttc 198  Q
    |||||||||||||||||| ||||||            |||||||||||| |||| |||||||||||||||||||||||    
T  38684583 ttaaataagtgtagaaaacattgtcaaaaaaaaaaaaggcaacaggatatgaatcaaataaaggcatgaaattggttc 38684506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 25 - 149
Target Start/End: Original strand, 52407676 - 52407800
Alignment:
Q  25 gagagaaacatgtttagggcttggtatatataaccaagtttacatggaaattagggtggtcgaatttgcatgaaaattatggtattctgtttgtaaacgt 124  Q
    ||||||| || |||||||||||||||||||||||||||||||||||||||||||||| | ||| |||||||| |||||| |||||||||||| |||||||    
T  52407676 gagagaatcacgtttagggcttggtatatataaccaagtttacatggaaattagggtagccgagtttgcatggaaattagggtattctgtttataaacgt 52407775  T
Q  125 attaaataagtgtagaaaatattgt 149  Q
    |||||||||| ||||||||||||||    
T  52407776 attaaataagcgtagaaaatattgt 52407800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 25 - 147
Target Start/End: Original strand, 45417054 - 45417176
Alignment:
Q  25 gagagaaacatgtttagggcttggtatatataaccaagtttacatggaaattagggtggtcgaatttgcatgaaaattatggtattctgtttgtaaacgt 124  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||| |||| ||| | ||| |||||||| |||||| ||||||||||||||||||||    
T  45417054 gagagaaacacgtttagggcttggtatatataaccaagtttacatggagattacggtagccgagtttgcatgcaaattagggtattctgtttgtaaacgt 45417153  T
Q  125 attaaataagtgtagaaaatatt 147  Q
    |||||||||||||| ||||||||    
T  45417154 attaaataagtgtaaaaaatatt 45417176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 47 - 198
Target Start/End: Original strand, 42491791 - 42491947
Alignment:
Q  47 ggtatatataaccaagtttacatggaaattagggtggtcgaatttgcatgaaaattatggtattctgtttgtaaacgtattaaataagtgtagaaaatat 146  Q
    ||||||| ||||||||||||||||||||||||| | ||||| |||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  42491791 ggtatatgtaaccaagtttacatggaaattaggatagtcgagtttgcatggaaattagggtattctgtttgtaaacgtattaaataagtgtagaaaatat 42491890  T
Q  147 tgtc-----nnnnnnnggcaacaggataggaatgaaataaaggcatgaaattggttc 198  Q
    ||||            ||||||| |||||||||||||||||||||| ||||||||||    
T  42491891 tgtccaaaaaaaaataggcaacatgataggaatgaaataaaggcataaaattggttc 42491947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 36 - 198
Target Start/End: Complemental strand, 21618564 - 21618398
Alignment:
Q  36 gtttagggcttggtatatataaccaagtttacatggaaattagggtggtcgaatttgcatgaaaattatggtattctgtttgtaaacgtattaaataagt 135  Q
    ||||| |||||||||||||||| ||||||||||||||||||| ||  |  || |||||||| |||||| |||||||||||||||||||||||||||||||    
T  21618564 gtttacggcttggtatatataatcaagtttacatggaaattacggaagctgagtttgcatggaaattagggtattctgtttgtaaacgtattaaataagt 21618465  T
Q  136 gtagaaaatattgtc----nnnnnnnggcaacaggataggaatgaaataaaggcatgaaattggttc 198  Q
    |||||||||||||||           |||||||| ||||||||||||||||| ||||||||||||||    
T  21618464 gtagaaaatattgtcaaaaaaaaaaaggcaacagtataggaatgaaataaagacatgaaattggttc 21618398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 25 - 198
Target Start/End: Complemental strand, 18913008 - 18912831
Alignment:
Q  25 gagagaaacatgtttagggcttggtatatataaccaagtttacatggaaattagggtggtcgaatttgcatgaaaattatggtattctgtttgtaaacgt 124  Q
    |||||||||| |||||||||||||||||||||||||| |||| ||||||||||  || | ||| |||||||| |||||| ||||||||||||||||||||    
T  18913008 gagagaaacacgtttagggcttggtatatataaccaaatttatatggaaattaaagtagccgagtttgcatggaaattagggtattctgtttgtaaacgt 18912909  T
Q  125 attaaataagtgtagaaaatattgt----cnnnnnnnggcaacaggataggaatgaaataaaggcatgaaattggttc 198  Q
    |||||||||   || ||||||||||            ||||||| |||||||||||||||||||||||||||||||||    
T  18912908 attaaataaaaatataaaatattgtaaaaaaaaaacaggcaacatgataggaatgaaataaaggcatgaaattggttc 18912831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 26 - 145
Target Start/End: Original strand, 25931535 - 25931662
Alignment:
Q  26 agagaaacatgtttagggcttggtatatataaccaagtttacatggaaattagggtggtcgaatttgcat--------gaaaattatggtattctgtttg 117  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| | | | |||||||        |||||||| |||||||||||||    
T  25931535 agagaaacatgtttagggcttagtatatataaccaagtttacatggaaattacggtagccaagtttgcatgaaaattagaaaattagggtattctgtttg 25931634  T
Q  118 taaacgtattaaataagtgtagaaaata 145  Q
    ||||||||||||||||||||||||||||    
T  25931635 taaacgtattaaataagtgtagaaaata 25931662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 28 - 122
Target Start/End: Original strand, 6537374 - 6537468
Alignment:
Q  28 agaaacatgtttagggcttggtatatataaccaagtttacatggaaattagggtggtcgaatttgcatgaaaattatggtattctgtttgtaaac 122  Q
    ||||||| |||||||| ||||||||||||||||||||||||||||||||||||| | ||| |||||||| |||||| ||||||||||||||||||    
T  6537374 agaaacacgtttagggtttggtatatataaccaagtttacatggaaattagggtaggcgagtttgcatggaaattagggtattctgtttgtaaac 6537468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 36 - 138
Target Start/End: Complemental strand, 46533265 - 46533163
Alignment:
Q  36 gtttagggcttggtatatataaccaagtttacatggaaattagggtggtcgaatttgcatgaaaattatggtattctgtttgtaaacgtattaaataagt 135  Q
    |||||| | ||| |||||||| || ||||| ||||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||||||||||||||    
T  46533265 gtttagagtttgctatatatagccgagtttgcatggaaattagggtagtcgagtttgcatgaaaattagggtattctgtttgtaaacgtattaaataagt 46533166  T
Q  136 gta 138  Q
    |||    
T  46533165 gta 46533163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 68 - 138
Target Start/End: Original strand, 23482428 - 23482498
Alignment:
Q  68 atggaaattagggtggtcgaatttgcatgaaaattatggtattctgtttgtaaacgtattaaataagtgta 138  Q
    |||||||||||||| |||||||||||||| |||||| ||||||||||||||||||||||||||||||||||    
T  23482428 atggaaattagggtagtcgaatttgcatggaaattagggtattctgtttgtaaacgtattaaataagtgta 23482498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 36 - 138
Target Start/End: Complemental strand, 41462878 - 41462776
Alignment:
Q  36 gtttagggcttggtatatataaccaagtttacatggaaattagggtggtcgaatttgcatgaaaattatggtattctgtttgtaaacgtattaaataagt 135  Q
    |||||||| ||| |||||||| |  ||||| ||||||||||||||| |  ||||||||||| |||||| |||||| ||||||||||||||||||||||||    
T  41462878 gtttagggtttgctatatatagctgagtttgcatggaaattagggtagctgaatttgcatggaaattagggtattttgtttgtaaacgtattaaataagt 41462779  T
Q  136 gta 138  Q
    |||    
T  41462778 gta 41462776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 236 - 288
Target Start/End: Complemental strand, 44264192 - 44264140
Alignment:
Q  236 atgaaattagtgcgatgaatttttctggtattgtgtacaaaatattgtcaaaa 288  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  44264192 atgaaattagtgcgatgaatttttctagtattgtgtacaaaatattgtcaaaa 44264140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 236 - 288
Target Start/End: Original strand, 45417268 - 45417320
Alignment:
Q  236 atgaaattagtgcgatgaatttttctggtattgtgtacaaaatattgtcaaaa 288  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  45417268 atgaaattagtgcgatgaatttttctagtattgtgtacaaaatattgtcaaaa 45417320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 36 - 138
Target Start/End: Complemental strand, 11928582 - 11928480
Alignment:
Q  36 gtttagggcttggtatatataaccaagtttacatggaaattagggtggtcgaatttgcatgaaaattatggtattctgtttgtaaacgtattaaataagt 135  Q
    |||||| | ||| |||||||| |  ||||| |||| |||||||||| ||||| ||| |||| |||||| ||||||||||||||||| |||||||||||||    
T  11928582 gtttagagtttgttatatatagctgagtttgcatgaaaattagggtagtcgagttttcatggaaattagggtattctgtttgtaaaagtattaaataagt 11928483  T
Q  136 gta 138  Q
    |||    
T  11928482 gta 11928480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 28 - 81
Target Start/End: Original strand, 6537310 - 6537363
Alignment:
Q  28 agaaacatgtttagggcttggtatatataaccaagtttacatggaaattagggt 81  Q
    ||||||| |||||||| |||||||||||||||||||||||||||||||||||||    
T  6537310 agaaacacgtttagggtttggtatatataaccaagtttacatggaaattagggt 6537363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 236 - 293
Target Start/End: Complemental strand, 12115744 - 12115687
Alignment:
Q  236 atgaaattagtgcgatgaatttttctggtattgtgtacaaaatattgtcaaaatgaaa 293  Q
    ||||||||||||||||||||||||||  ||||||||||||||||||||||||| ||||    
T  12115744 atgaaattagtgcgatgaatttttctattattgtgtacaaaatattgtcaaaaagaaa 12115687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 240 - 288
Target Start/End: Original strand, 3226902 - 3226950
Alignment:
Q  240 aattagtgcgatgaatttttctggtattgtgtacaaaatattgtcaaaa 288  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  3226902 aattagtgcgatgaatttttctagtattgtgtacaaaatattgtcaaaa 3226950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 236 - 288
Target Start/End: Original strand, 4100287 - 4100339
Alignment:
Q  236 atgaaattagtgcgatgaatttttctggtattgtgtacaaaatattgtcaaaa 288  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||| ||||    
T  4100287 atgaaattagtgcgatgaatttttctagtattgtgtacaaaatattgtaaaaa 4100339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 236 - 288
Target Start/End: Complemental strand, 38684469 - 38684417
Alignment:
Q  236 atgaaattagtgcgatgaatttttctggtattgtgtacaaaatattgtcaaaa 288  Q
    |||||||||||||||||||||||||| ||||||| ||||||||||||||||||    
T  38684469 atgaaattagtgcgatgaatttttctagtattgtatacaaaatattgtcaaaa 38684417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 236 - 287
Target Start/End: Complemental strand, 1647940 - 1647889
Alignment:
Q  236 atgaaattagtgcgatgaatttttctggtattgtgtacaaaatattgtcaaa 287  Q
    |||||||||| ||||||||||||||| |||||||||||||||||||||||||    
T  1647940 atgaaattagggcgatgaatttttctagtattgtgtacaaaatattgtcaaa 1647889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 93 - 150
Target Start/End: Original strand, 4100135 - 4100192
Alignment:
Q  93 catgaaaattatggtattctgtttgtaaacgtattaaataagtgtagaaaatattgtc 150  Q
    ||||||||||  |||||||| ||||| |||||||||||||||||||||||||||||||    
T  4100135 catgaaaatttgggtattctatttgttaacgtattaaataagtgtagaaaatattgtc 4100192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 89 - 138
Target Start/End: Complemental strand, 41461156 - 41461107
Alignment:
Q  89 tttgcatgaaaattatggtattctgtttgtaaacgtattaaataagtgta 138  Q
    |||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  41461156 tttggatgaaaattagggtattctgtttgtaaacgtattaaataagtgta 41461107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 100 - 149
Target Start/End: Complemental strand, 43762318 - 43762269
Alignment:
Q  100 attatggtattctgtttgtaaacgtattaaataagtgtagaaaatattgt 149  Q
    |||| |||||||| ||||||||||||||||||||||||||||||||||||    
T  43762318 attagggtattctatttgtaaacgtattaaataagtgtagaaaatattgt 43762269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 25 - 81
Target Start/End: Original strand, 4100093 - 4100149
Alignment:
Q  25 gagagaaacatgtttagggcttggtatatataaccaagtttacatggaaattagggt 81  Q
    ||||||||||  |||||||||||||||||||||||||||||||||| ||||| ||||    
T  4100093 gagagaaacacatttagggcttggtatatataaccaagtttacatgaaaatttgggt 4100149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 93 - 147
Target Start/End: Complemental strand, 39282257 - 39282203
Alignment:
Q  93 catgaaaattatggtattctgtttgtaaacgtattaaataagtgtagaaaatatt 147  Q
    |||| |||||| |||||||||||||||| ||||||||||||||||| ||||||||    
T  39282257 catggaaattaaggtattctgtttgtaaccgtattaaataagtgtaaaaaatatt 39282203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 236 - 293
Target Start/End: Complemental strand, 47791085 - 47791027
Alignment:
Q  236 atgaaattagtgcgatgaa-tttttctggtattgtgtacaaaatattgtcaaaatgaaa 293  Q
    ||||||||||||||||||| ||||||| ||||||||||||||||||||| |||| ||||    
T  47791085 atgaaattagtgcgatgaaatttttctagtattgtgtacaaaatattgttaaaaagaaa 47791027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 236 - 288
Target Start/End: Complemental strand, 21618361 - 21618308
Alignment:
Q  236 atgaaattagtgcgatgaatttttctggta-ttgtgtacaaaatattgtcaaaa 288  Q
    |||||||||||||||||||||||||| ||| ||||||||||||| |||||||||    
T  21618361 atgaaattagtgcgatgaatttttctagtatttgtgtacaaaatgttgtcaaaa 21618308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 236 - 288
Target Start/End: Original strand, 51272153 - 51272205
Alignment:
Q  236 atgaaattagtgcgatgaatttttctggtattgtgtacaaaatattgtcaaaa 288  Q
    ||||||||||||||| |||||||| | ||||||||| ||||||||||||||||    
T  51272153 atgaaattagtgcgacgaatttttttagtattgtgtgcaaaatattgtcaaaa 51272205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 81
Target Start/End: Complemental strand, 318902 - 318868
Alignment:
Q  47 ggtatatataaccaagtttacatggaaattagggt 81  Q
    |||||||||||||||||||||||||||||||||||    
T  318902 ggtatatataaccaagtttacatggaaattagggt 318868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 81
Target Start/End: Original strand, 1155870 - 1155904
Alignment:
Q  47 ggtatatataaccaagtttacatggaaattagggt 81  Q
    |||||||||||||||||||||||||||||||||||    
T  1155870 ggtatatataaccaagtttacatggaaattagggt 1155904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 81
Target Start/End: Complemental strand, 24595506 - 24595472
Alignment:
Q  47 ggtatatataaccaagtttacatggaaattagggt 81  Q
    |||||||||||||||||||||||||||||||||||    
T  24595506 ggtatatataaccaagtttacatggaaattagggt 24595472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 76 - 130
Target Start/End: Complemental strand, 27892034 - 27891980
Alignment:
Q  76 tagggtggtcgaatttgcatgaaaattatggtattctgtttgtaaacgtattaaa 130  Q
    |||||| | ||| ||| ||||||||||| ||||||||||||||||||||||||||    
T  27892034 tagggtagccgagtttacatgaaaattaaggtattctgtttgtaaacgtattaaa 27891980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 81
Target Start/End: Original strand, 48411778 - 48411812
Alignment:
Q  47 ggtatatataaccaagtttacatggaaattagggt 81  Q
    |||||||||||||||||||||||||||||||||||    
T  48411778 ggtatatataaccaagtttacatggaaattagggt 48411812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 236 - 277
Target Start/End: Original strand, 25931747 - 25931788
Alignment:
Q  236 atgaaattagtgcgatgaatttttctggtattgtgtacaaaa 277  Q
    |||||||||||||||| ||||||||| |||||||||||||||    
T  25931747 atgaaattagtgcgataaatttttctagtattgtgtacaaaa 25931788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 77
Target Start/End: Original strand, 28949702 - 28949732
Alignment:
Q  47 ggtatatataaccaagtttacatggaaatta 77  Q
    |||||||||||||||||||||||||||||||    
T  28949702 ggtatatataaccaagtttacatggaaatta 28949732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 81
Target Start/End: Original strand, 44099419 - 44099453
Alignment:
Q  47 ggtatatataaccaagtttacatggaaattagggt 81  Q
    ||||||||||||||||||| |||||||||||||||    
T  44099419 ggtatatataaccaagtttgcatggaaattagggt 44099453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 109; Significance: 9e-55; HSPs: 45)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 25 - 197
Target Start/End: Original strand, 28379501 - 28379676
Alignment:
Q  25 gagagaaacatgtttagggcttggtatatataaccaagtttacatggaaattagggtggtcgaatttgcatgaaaattatggtattctgtttgtaaacgt 124  Q
    |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| | ||| ||||||||||||||| ||||||||||||||||||||    
T  28379501 gagagaaacacgtttagggcttggtatatgtaaccaagtttacatggaaattagggtagccgagtttgcatgaaaattagggtattctgtttgtaaacgt 28379600  T
Q  125 attaaataagtgtagaaaatattgtc---nnnnnnnggcaacaggataggaatgaaataaaggcatgaaattggtt 197  Q
    ||||||||||||||||||||||||||          |||| || ||||||||||||||||||||||||||||||||    
T  28379601 attaaataagtgtagaaaatattgtcaaaaaaaaaaggcatcaagataggaatgaaataaaggcatgaaattggtt 28379676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 26 - 197
Target Start/End: Complemental strand, 24050260 - 24050084
Alignment:
Q  26 agagaaacatgtttagggcttggtatatataaccaagtttacatggaaattagggtggtcgaatttgcatgaaaattatggtattctgtttgtaaacgta 125  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||| ||||||||||||||| |||||||||||||||||||||    
T  24050260 agagaaacatgtttagggcttggtatatataaccaagtttacatggaaattaggatagccgagtttgcatgaaaattagggtattctgtttgtaaacgta 24050161  T
Q  126 ttaaataagtgtagaaaatattgtc-----nnnnnnnggcaacaggataggaatgaaataaaggcatgaaattggtt 197  Q
    ||||||||||||| |||||||||||            |||| |||||||||||||||||||||||||||||||||||    
T  24050160 ttaaataagtgtaaaaaatattgtcaaaaaaaaaaaaggcagcaggataggaatgaaataaaggcatgaaattggtt 24050084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 25 - 197
Target Start/End: Complemental strand, 28813792 - 28813616
Alignment:
Q  25 gagagaaacatgtttagggcttggtatatataaccaagtttacatggaaattagggtggtcgaatttgcatgaaaattatggtattctgtttgtaaacgt 124  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | ||| |||||||| |||||| ||||||||||||||||||||    
T  28813792 gagagaaacacgtttagggcttggtatatataaccaagtttacatggaaattagggtagccgagtttgcatggaaattaaggtattctgtttgtaaacgt 28813693  T
Q  125 attaaataagtgtagaaaatattgtc----nnnnnnnggcaacaggataggaatgaaataaaggcatgaaattggtt 197  Q
    ||||||||||||||||||||||||||           ||||| | |||||||||||||||||||||| |||||||||    
T  28813692 attaaataagtgtagaaaatattgtcaaaaaaaaaaaggcaaaatgataggaatgaaataaaggcataaaattggtt 28813616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 25 - 198
Target Start/End: Complemental strand, 4942270 - 4942095
Alignment:
Q  25 gagagaaacatgtttagggcttggtatatataaccaagtttacatggaaattagggtggtcgaatttgcatgaaaattatggtattctgtttgtaaacgt 124  Q
    |||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| | ||| ||||||||||||||| ||||| ||||||||||||||    
T  4942270 gagagaaacacgtttaggggttggtatatataaccaagtttacatggaaattagggtagccgagtttgcatgaaaattagggtatactgtttgtaaacgt 4942171  T
Q  125 attaaataagtgtagaaaatattgt--cnnnnnnnggcaacaggataggaatgaaataaaggcatgaaattggttc 198  Q
    |||||| ||||||||||||||||||          || |||| |||||||||||||||||||||||||||||||||    
T  4942170 attaaacaagtgtagaaaatattgtaaaaaaaaaagggaacatgataggaatgaaataaaggcatgaaattggttc 4942095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 26 - 149
Target Start/End: Complemental strand, 8119176 - 8119053
Alignment:
Q  26 agagaaacatgtttagggcttggtatatataaccaagtttacatggaaattagggtggtcgaatttgcatgaaaattatggtattctgtttgtaaacgta 125  Q
    ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| | ||| ||||||||||||||| |||||||||||||||||||||    
T  8119176 agagagacatgtttagggcttggtatatataaccaagtttacatagaaattagggtagccgagtttgcatgaaaattaaggtattctgtttgtaaacgta 8119077  T
Q  126 ttaaataagtgtagaaaatattgt 149  Q
    ||||||||||||||||||||||||    
T  8119076 ttaaataagtgtagaaaatattgt 8119053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 25 - 198
Target Start/End: Complemental strand, 2177705 - 2177529
Alignment:
Q  25 gagagaaacatgtttagggcttggtatatataaccaagtttacatggaaattagggtggtcgaatttgcatgaaaattatggtattctgtttgtaaacgt 124  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| | ||| |||||||| ||| || |||||||||||| |||||||    
T  2177705 gagagaaacaagtttagggcttggtatatataaccaagtttacatggagattagggtagccgagtttgcatggaaaatagggtattctgtttataaacgt 2177606  T
Q  125 attaaataagtgtagaaaatattg---tcnnnnnnnggcaacaggataggaatgaaataaaggcatgaaattggttc 198  Q
    ||||||||||||||||||||||||   |        ||||||| |||||||||||||||||| ||||||||||||||    
T  2177605 attaaataagtgtagaaaatattgtaataaaaaaaaggcaacaagataggaatgaaataaagacatgaaattggttc 2177529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 26 - 198
Target Start/End: Complemental strand, 7822182 - 7822003
Alignment:
Q  26 agagaaacatgtttagggcttggtatatataaccaagtttacatggaaattagggtggtcgaatttgcatgaaaattatggtattctgtttgtaaacgta 125  Q
    ||||||||  ||||||||||||||||| |||||||||||||||||||||||||| | | ||| |||||||| |||||| |||||||||||||||||||||    
T  7822182 agagaaactcgtttagggcttggtataaataaccaagtttacatggaaattaggatagccgagtttgcatggaaattagggtattctgtttgtaaacgta 7822083  T
Q  126 ttaaataagtgtagaaaatattgtc-------nnnnnnnggcaacaggataggaatgaaataaaggcatgaaattggttc 198  Q
    |||||||||||||||||||||||||              ||||||||||||||||||||||||| |||||||||||||||    
T  7822082 ttaaataagtgtagaaaatattgtcaaaaaaaaaaaaaaggcaacaggataggaatgaaataaatgcatgaaattggttc 7822003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 30 - 149
Target Start/End: Original strand, 18001759 - 18001878
Alignment:
Q  30 aaacatgtttagggcttggtatatataaccaagtttacatggaaattagggtggtcgaatttgcatgaaaattatggtattctgtttgtaaacgtattaa 129  Q
    ||||| ||||||||||||||||| |||||||||||||||||||||||||||| | ||  ||||||||||||||| |||||||||||||||||||||||||    
T  18001759 aaacacgtttagggcttggtatacataaccaagtttacatggaaattagggtagccgtgtttgcatgaaaattagggtattctgtttgtaaacgtattaa 18001858  T
Q  130 ataagtgtagaaaatattgt 149  Q
    ||||||||||||| ||||||    
T  18001859 ataagtgtagaaattattgt 18001878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 26 - 198
Target Start/End: Complemental strand, 7797931 - 7797754
Alignment:
Q  26 agagaaacatgtttagggcttggtatatataaccaagtttacatggaaattagggtggtcgaatttgcatgaaaattatggtattctgtttgtaaacgta 125  Q
    ||||||||| || ||||| |||||||| ||||||||||||| |||||||||||||| | ||| |||||||  |||||| |||||||||||||||||||||    
T  7797931 agagaaacacgtatagggtttggtataaataaccaagtttatatggaaattagggtagccgagtttgcattgaaattagggtattctgtttgtaaacgta 7797832  T
Q  126 ttaaataagtgtagaaaatattgt-----cnnnnnnnggcaacaggataggaatgaaataaaggcatgaaattggttc 198  Q
    ||||||||||||||||||||||||             ||||||||||||||||||||||||| |||||||||||||||    
T  7797831 ttaaataagtgtagaaaatattgtaaaaaaaaaaaaaggcaacaggataggaatgaaataaatgcatgaaattggttc 7797754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 40 - 150
Target Start/End: Complemental strand, 12900028 - 12899918
Alignment:
Q  40 agggcttggtatatataaccaagtttacatggaaattagggtggtcgaatttgcatgaaaattatggtattctgtttgtaaacgtattaaataagtgtag 139  Q
    ||||||||||||||||||||||||||||||| |||||||||| | ||| ||||||||||||||| || | ||||||||||||||||||||||||||||||    
T  12900028 agggcttggtatatataaccaagtttacatgaaaattagggtagccgagtttgcatgaaaattagggcaatctgtttgtaaacgtattaaataagtgtag 12899929  T
Q  140 aaaatattgtc 150  Q
    |||||||||||    
T  12899928 aaaatattgtc 12899918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 30 - 197
Target Start/End: Complemental strand, 22293551 - 22293380
Alignment:
Q  30 aaacatgtttagggcttggtatatataaccaagtttacatggaaattagggtggtcgaatttgcatgaaaattatggtattctgtttgtaaacgtattaa 129  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||| | | ||| |||||||  |||||| |||||||||||||||||||||||||    
T  22293551 aaacacgtttagggcttggtatatataaccaagtttacatggaaattaggatagccgagtttgcatagaaattagggtattctgtttgtaaacgtattaa 22293452  T
Q  130 ataagtgtag--aaaatattgt--cnnnnnnnggcaacaggataggaatgaaataaaggcatgaaattggtt 197  Q
    ||||||||||  ||| ||||||          | |||||||||| |||||||||||||||||||||||||||    
T  22293451 ataagtgtagataaagtattgtaaaaaataaagacaacaggataagaatgaaataaaggcatgaaattggtt 22293380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 25 - 129
Target Start/End: Original strand, 8397101 - 8397205
Alignment:
Q  25 gagagaaacatgtttagggcttggtatatataaccaagtttacatggaaattagggtggtcgaatttgcatgaaaattatggtattctgtttgtaaacgt 124  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | ||| |||||||| |||||| |||||||||||||||||| |    
T  8397101 gagagaaacacgtttagggcttggtatatataaccaagtttacatggaaattagggtagccgagtttgcatggaaattagggtattctgtttgtaaacat 8397200  T
Q  125 attaa 129  Q
    |||||    
T  8397201 attaa 8397205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 36 - 198
Target Start/End: Original strand, 52688917 - 52689084
Alignment:
Q  36 gtttagggcttggtatatataaccaagtttacatggaaattagggtggtcgaatttgcatgaaaattatggtattctgtttgtaaacgtattaaataagt 135  Q
    ||||| |||||||||||||||| ||||||||||||||||||| ||  |  || |||||||| |||||  |||||||||||||||||| ||||||||||||    
T  52688917 gtttacggcttggtatatataatcaagtttacatggaaattacggaagctgagtttgcatggaaattggggtattctgtttgtaaacatattaaataagt 52689016  T
Q  136 gtagaaaatattgtc-----nnnnnnnggcaacaggataggaatgaaataaaggcatgaaattggttc 198  Q
    |||||||||||||||            |||||||| ||||||||||||||||||||||||||||||||    
T  52689017 gtagaaaatattgtcaaaaaaaaaaaaggcaacagtataggaatgaaataaaggcatgaaattggttc 52689084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 26 - 125
Target Start/End: Complemental strand, 7812704 - 7812605
Alignment:
Q  26 agagaaacatgtttagggcttggtatatataaccaagtttacatggaaattagggtggtcgaatttgcatgaaaattatggtattctgtttgtaaacgta 125  Q
    ||||||||| ||||||||||||||||  |||||||||||||||||||||||||||| | ||| |||||||| |||||| |||||||||||||||||||||    
T  7812704 agagaaacacgtttagggcttggtatgaataaccaagtttacatggaaattagggtagccgagtttgcatggaaattagggtattctgtttgtaaacgta 7812605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 47 - 150
Target Start/End: Original strand, 12795688 - 12795791
Alignment:
Q  47 ggtatatataaccaagtttacatggaaattagggtggtcgaatttgcatgaaaattatggtattctgtttgtaaacgtattaaataagtgtagaaaatat 146  Q
    ||||||||||||||| ||||||||||||||||||| || || |||||||| ||||||  |||||||| ||||||||||| ||||||||||||||||||||    
T  12795688 ggtatatataaccaaatttacatggaaattagggtagttgagtttgcatggaaattagagtattctggttgtaaacgtactaaataagtgtagaaaatat 12795787  T
Q  147 tgtc 150  Q
    ||||    
T  12795788 tgtc 12795791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 47 - 197
Target Start/End: Original strand, 8478709 - 8478861
Alignment:
Q  47 ggtatatataaccaagtttacatggaaattagggtggtcgaatttgcatgaaaattatggtattctgtttgtaaacgtattaaataagtgtagaaaatat 146  Q
    |||||||||||||||||||||||| ||||||| || | ||  |||||||| |||||| |||||||||||| ||||||||||||||||||||||||||| |    
T  8478709 ggtatatataaccaagtttacatgaaaattagtgtagccgggtttgcatggaaattaaggtattctgtttataaacgtattaaataagtgtagaaaattt 8478808  T
Q  147 tgtc--nnnnnnnggcaacaggataggaatgaaataaaggcatgaaattggtt 197  Q
    || |         ||||||| |||||||||||||||||| ||| |||||||||    
T  8478809 tgccaaaaaaaaaggcaacatgataggaatgaaataaagacataaaattggtt 8478861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 66 - 198
Target Start/End: Original strand, 54653156 - 54653288
Alignment:
Q  66 acatggaaattagggtggtcgaatttgcatgaaaattatggtattctgtttgtaaacgtattaaataagtgtagaaaatattgt-cnnnnnnnggcaaca 164  Q
    |||| ||||||||||| | ||| |||||||| |||||| ||||||||| |||||||||||||||||||||||||||||||||||         |||||||    
T  54653156 acatagaaattagggtagccgagtttgcatggaaattagggtattctggttgtaaacgtattaaataagtgtagaaaatattgtaaaaaaaaaggcaaca 54653255  T
Q  165 ggataggaatgaaataaaggcatgaaattggttc 198  Q
     |||| ||||||||||||||||||||||||||||    
T  54653256 tgata-gaatgaaataaaggcatgaaattggttc 54653288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 74 - 194
Target Start/End: Original strand, 53144340 - 53144465
Alignment:
Q  74 attagggtggtcgaatttgcatgaaaattatggtattctgtttgtaaacgtattaaataagtgtagaaaatattgt-----cnnnnnnnggcaacaggat 168  Q
    |||||||| | ||| |||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||             |||||| ||||    
T  53144340 attagggtagccgagtttgcatggaaattagggtattctgtttgtaaacgtattaaataagtgtagaaaatattgtaaaaaaaaaaaaaggcaacgggat 53144439  T
Q  169 aggaatgaaataaaggcatgaaattg 194  Q
    ||||||||||||||||||||||||||    
T  53144440 aggaatgaaataaaggcatgaaattg 53144465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 236 - 293
Target Start/End: Complemental strand, 8118967 - 8118910
Alignment:
Q  236 atgaaattagtgcgatgaatttttctggtattgtgtacaaaatattgtcaaaatgaaa 293  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||    
T  8118967 atgaaattagtgcgatgaatttttctagtattgtgtacaaaatattgtcaaaaagaaa 8118910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 236 - 288
Target Start/End: Complemental strand, 4942055 - 4942003
Alignment:
Q  236 atgaaattagtgcgatgaatttttctggtattgtgtacaaaatattgtcaaaa 288  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  4942055 atgaaattagtgcgatgaatttttctagtattgtgtacaaaatattgtcaaaa 4942003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 236 - 293
Target Start/End: Original strand, 53144507 - 53144564
Alignment:
Q  236 atgaaattagtgcgatgaatttttctggtattgtgtacaaaatattgtcaaaatgaaa 293  Q
    |||||||||||||||||||||||||| ||||||| |||||||||||||||||| ||||    
T  53144507 atgaaattagtgcgatgaatttttctagtattgtatacaaaatattgtcaaaaagaaa 53144564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 236 - 293
Target Start/End: Original strand, 54653329 - 54653386
Alignment:
Q  236 atgaaattagtgcgatgaatttttctggtattgtgtacaaaatattgtcaaaatgaaa 293  Q
    |||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||    
T  54653329 atgaaatttgtgcgatgaatttttctagtattgtgtacaaaatattgtcaaaaagaaa 54653386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 236 - 288
Target Start/End: Complemental strand, 2177487 - 2177435
Alignment:
Q  236 atgaaattagtgcgatgaatttttctggtattgtgtacaaaatattgtcaaaa 288  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||| ||||    
T  2177487 atgaaattagtgcgatgaatttttctagtattgtgtacaaaatattgtaaaaa 2177435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 236 - 288
Target Start/End: Complemental strand, 29967580 - 29967528
Alignment:
Q  236 atgaaattagtgcgatgaatttttctggtattgtgtacaaaatattgtcaaaa 288  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||| ||||    
T  29967580 atgaaattagtgcgatgaatttttctagtattgtgtacaaaatattgtaaaaa 29967528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 89 - 138
Target Start/End: Original strand, 24389744 - 24389793
Alignment:
Q  89 tttgcatgaaaattatggtattctgtttgtaaacgtattaaataagtgta 138  Q
    ||||||||||||||| |||||||||||||||||| |||||||||||||||    
T  24389744 tttgcatgaaaattagggtattctgtttgtaaacatattaaataagtgta 24389793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 97 - 198
Target Start/End: Complemental strand, 47632024 - 47631920
Alignment:
Q  97 aaaattatggtattctgtttgtaaacgtattaaataagtgtagaaaatattgtc---nnnnnnnggcaacaggataggaatgaaataaaggcatgaaatt 193  Q
    ||||||| || ||||||||||||||||||||||||||| ||||||||||| |||          ||||||| |||||||||||||||||| ||| |||||    
T  47632024 aaaattagggcattctgtttgtaaacgtattaaataagggtagaaaatatcgtcaaaaaaaaaaggcaacatgataggaatgaaataaagacataaaatt 47631925  T
Q  194 ggttc 198  Q
    |||||    
T  47631924 ggttc 47631920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 236 - 288
Target Start/End: Complemental strand, 7809962 - 7809910
Alignment:
Q  236 atgaaattagtgcgatgaatttttctggtattgtgtacaaaatattgtcaaaa 288  Q
    |||| ||||||||||||||||||||| ||||| ||||||||||||||||||||    
T  7809962 atgagattagtgcgatgaatttttctagtattttgtacaaaatattgtcaaaa 7809910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 236 - 288
Target Start/End: Complemental strand, 7821961 - 7821909
Alignment:
Q  236 atgaaattagtgcgatgaatttttctggtattgtgtacaaaatattgtcaaaa 288  Q
    |||| ||||||||||||||||||||| ||||| ||||||||||||||||||||    
T  7821961 atgagattagtgcgatgaatttttctagtattttgtacaaaatattgtcaaaa 7821909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 236 - 288
Target Start/End: Original strand, 52689122 - 52689175
Alignment:
Q  236 atgaaattagtgcgatgaatttttctggta-ttgtgtacaaaatattgtcaaaa 288  Q
    |||||||||||||||||||||||||| ||| ||||||||||||| |||||||||    
T  52689122 atgaaattagtgcgatgaatttttctagtatttgtgtacaaaatgttgtcaaaa 52689175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 236 - 288
Target Start/End: Original strand, 18001967 - 18002019
Alignment:
Q  236 atgaaattagtgcgatgaatttttctggtattgtgtacaaaatattgtcaaaa 288  Q
    ||||||||||||||||||| |||||  || |||||||||||||||||||||||    
T  18001967 atgaaattagtgcgatgaaattttcgagttttgtgtacaaaatattgtcaaaa 18002019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 236 - 288
Target Start/End: Complemental strand, 22293343 - 22293291
Alignment:
Q  236 atgaaattagtgcgatgaatttttctggtattgtgtacaaaatattgtcaaaa 288  Q
    |||||||||||| ||| ||||||||| ||||| ||||||||||||||||||||    
T  22293343 atgaaattagtgtgataaatttttctagtattatgtacaaaatattgtcaaaa 22293291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 236 - 288
Target Start/End: Original strand, 41851833 - 41851885
Alignment:
Q  236 atgaaattagtgcgatgaatttttctggtattgtgtacaaaatattgtcaaaa 288  Q
    ||||||||| ||||| |||||||||| ||||||||||||||||||||| ||||    
T  41851833 atgaaattaatgcgacgaatttttctagtattgtgtacaaaatattgtaaaaa 41851885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 26 - 70
Target Start/End: Original strand, 53143214 - 53143258
Alignment:
Q  26 agagaaacatgtttagggcttggtatatataaccaagtttacatg 70  Q
    ||||||||| |||||||| ||||||||||||||||||||||||||    
T  53143214 agagaaacacgtttagggtttggtatatataaccaagtttacatg 53143258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 62 - 133
Target Start/End: Complemental strand, 46883629 - 46883559
Alignment:
Q  62 gtttacatggaaattagggtggtcgaatttgcatgaaaattatggtattctgtttgtaaacgtattaaataa 133  Q
    |||| ||||||||||||||| || || ||||||||||| | | |||||||| ||||||||||||||||||||    
T  46883629 gttttcatggaaattagggtagttgagtttgcatgaaagt-agggtattctatttgtaaacgtattaaataa 46883559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 89 - 138
Target Start/End: Complemental strand, 2527263 - 2527214
Alignment:
Q  89 tttgcatgaaaattatggtattctgtttgtaaacgtattaaataagtgta 138  Q
    ||||||||||||||| | |||| |||||||||| ||||||||||||||||    
T  2527263 tttgcatgaaaattaggatattttgtttgtaaatgtattaaataagtgta 2527214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 89 - 138
Target Start/End: Complemental strand, 9711511 - 9711462
Alignment:
Q  89 tttgcatgaaaattatggtattctgtttgtaaacgtattaaataagtgta 138  Q
    |||||||| ||||||  ||||| |||||||||||||||||||||||||||    
T  9711511 tttgcatggaaattagagtattatgtttgtaaacgtattaaataagtgta 9711462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 158 - 198
Target Start/End: Complemental strand, 7810041 - 7810001
Alignment:
Q  158 ggcaacaggataggaatgaaataaaggcatgaaattggttc 198  Q
    |||||||| |||||||||||||||| |||||||||||||||    
T  7810041 ggcaacagaataggaatgaaataaatgcatgaaattggttc 7810001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 159 - 198
Target Start/End: Original strand, 8397245 - 8397284
Alignment:
Q  159 gcaacaggataggaatgaaataaaggcatgaaattggttc 198  Q
    ||||||  ||||||||||||||||||||||||||||||||    
T  8397245 gcaacaacataggaatgaaataaaggcatgaaattggttc 8397284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 288
Target Start/End: Complemental strand, 24050043 - 24049993
Alignment:
Q  238 gaaattagtgcgatgaatttttctggtattgtgtacaaaatattgtcaaaa 288  Q
    |||||||||| |||||||||||||  |||||| ||||||||||||| ||||    
T  24050043 gaaattagtgtgatgaatttttctaatattgtttacaaaatattgttaaaa 24049993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 81
Target Start/End: Complemental strand, 36639642 - 36639608
Alignment:
Q  47 ggtatatataaccaagtttacatggaaattagggt 81  Q
    |||||||||||||||| ||||||||||||||||||    
T  36639642 ggtatatataaccaagcttacatggaaattagggt 36639608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 195
Target Start/End: Original strand, 41851780 - 41851814
Alignment:
Q  161 aacaggataggaatgaaataaaggcatgaaattgg 195  Q
    |||| ||||||||||||||||||||||||||||||    
T  41851780 aacatgataggaatgaaataaaggcatgaaattgg 41851814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 81
Target Start/End: Complemental strand, 47769248 - 47769214
Alignment:
Q  47 ggtatatataaccaagtttacatggaaattagggt 81  Q
    |||||||||||||||||||||||| ||||||||||    
T  47769248 ggtatatataaccaagtttacatgaaaattagggt 47769214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 269
Target Start/End: Complemental strand, 28813575 - 28813542
Alignment:
Q  236 atgaaattagtgcgatgaatttttctggtattgt 269  Q
    |||||||||||||||||||||||||| |||||||    
T  28813575 atgaaattagtgcgatgaatttttctagtattgt 28813542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 197
Target Start/End: Complemental strand, 29967650 - 29967621
Alignment:
Q  168 taggaatgaaataaaggcatgaaattggtt 197  Q
    ||||||||||||||||||||||||||||||    
T  29967650 taggaatgaaataaaggcatgaaattggtt 29967621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 81
Target Start/End: Original strand, 21581029 - 21581061
Alignment:
Q  49 tatatataaccaagtttacatggaaattagggt 81  Q
    ||||||||||||| |||||||||||||||||||    
T  21581029 tatatataaccaattttacatggaaattagggt 21581061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 104; Significance: 8e-52; HSPs: 2)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 25 - 197
Target Start/End: Complemental strand, 13317 - 13145
Alignment:
Q  25 gagagaaacatgtttagggcttggtatatataaccaagtttacatggaaattagggtggtcgaatttgcatgaaaattatggtattctgtttgtaaacgt 124  Q
    |||||||||| || |||||||||||||||||||||||||||||||||||||||||||    || ||||||||||||||| ||||||||||||||||||||    
T  13317 gagagaaacacgtatagggcttggtatatataaccaagtttacatggaaattagggtatctgagtttgcatgaaaattagggtattctgtttgtaaacgt 13218  T
Q  125 attaaataagtgtagaaaatattgtcnnnnnnnggcaacaggataggaatgaaataaaggcatgaaattggtt 197  Q
    ||||||||||||||||||||||| |        ||||||| ||||||||||||||||| ||||||||||||||    
T  13217 attaaataagtgtagaaaatattataaaaaaaaggcaacaagataggaatgaaataaatgcatgaaattggtt 13145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 236 - 288
Target Start/End: Complemental strand, 13100 - 13048
Alignment:
Q  236 atgaaattagtgcgatgaatttttctggtattgtgtacaaaatattgtcaaaa 288  Q
    ||||||||||||| |||||||||||| |||||||||| |||||||||||||||    
T  13100 atgaaattagtgcaatgaatttttctagtattgtgtagaaaatattgtcaaaa 13048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 104; Significance: 8e-52; HSPs: 31)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 25 - 197
Target Start/End: Original strand, 20876695 - 20876867
Alignment:
Q  25 gagagaaacatgtttagggcttggtatatataaccaagtttacatggaaattagggtggtcgaatttgcatgaaaattatggtattctgtttgtaaacgt 124  Q
    ||||||||||||||||||||||||||||||||||||| |||| ||| |||||||||| | ||| ||||||||||||||| |||||| |||||||||||||    
T  20876695 gagagaaacatgtttagggcttggtatatataaccaaatttaaatgaaaattagggtagccgagtttgcatgaaaattagggtattttgtttgtaaacgt 20876794  T
Q  125 attaaataagtgtagaaaatattgtcnnnnnnnggcaacaggataggaatgaaataaaggcatgaaattggtt 197  Q
    ||||||||||||||||||||||||||          |||| ||||||||||||||||||||||||||||||||    
T  20876795 attaaataagtgtagaaaatattgtcaaaaaaaaaaaacatgataggaatgaaataaaggcatgaaattggtt 20876867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 26 - 149
Target Start/End: Complemental strand, 11523197 - 11523074
Alignment:
Q  26 agagaaacatgtttagggcttggtatatataaccaagtttacatggaaattagggtggtcgaatttgcatgaaaattatggtattctgtttgtaaacgta 125  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |||||| ||||||||||||||    
T  11523197 agagaaacacgtttagggcttggtatatataaccaagtttacatggaaattagggtagtcgagtttgcatgaaaattagggtattatgtttgtaaacgta 11523098  T
Q  126 ttaaataagtgtagaaaatattgt 149  Q
    ||||||||||| ||||||||||||    
T  11523097 ttaaataagtggagaaaatattgt 11523074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 25 - 138
Target Start/End: Complemental strand, 51654621 - 51654508
Alignment:
Q  25 gagagaaacatgtttagggcttggtatatataaccaagtttacatggaaattagggtggtcgaatttgcatgaaaattatggtattctgtttgtaaacgt 124  Q
    |||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||| ||||| |||||||| |||||  |||||||||||| |||||||    
T  51654621 gagagaaacacgtttagggcttggtatatataaccaagtttacatgaaaattggggtagtcgagtttgcatggaaattggggtattctgtttataaacgt 51654522  T
Q  125 attaaataagtgta 138  Q
    ||||||||||||||    
T  51654521 attaaataagtgta 51654508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 28 - 149
Target Start/End: Original strand, 38887041 - 38887162
Alignment:
Q  28 agaaacatgtttagggcttggtatatataaccaagtttacatggaaattagggtggtcgaatttgcatgaaaattatggtattctgtttgtaaacgtatt 127  Q
    ||||||| |||||||| ||||||||||||| ||||||| ||||||||| ||||| | | | ||| |||| |||||| |||||| ||||||||||||||||    
T  38887041 agaaacacgtttagggtttggtatatataatcaagtttgcatggaaatcagggtagccaagttttcatggaaattagggtattatgtttgtaaacgtatt 38887140  T
Q  128 aaataagtgtagaaaatattgt 149  Q
    ||||||||||||||||||||||    
T  38887141 aaataagtgtagaaaatattgt 38887162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 25 - 118
Target Start/End: Complemental strand, 860572 - 860479
Alignment:
Q  25 gagagaaacatgtttagggcttggtatatataaccaagtttacatggaaattagggtggtcgaatttgcatgaaaattatggtattctgtttgt 118  Q
    |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||  | ||| ||||||||||||||| ||||||||||||||    
T  860572 gagagaaacacgtttaggccttggtatatataaccaagtttacatggaaattagggaagccgagtttgcatgaaaattagggtattctgtttgt 860479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 26 - 149
Target Start/End: Complemental strand, 10267254 - 10267131
Alignment:
Q  26 agagaaacatgtttagggcttggtatatataaccaagtttacatggaaattagggtggtcgaatttgcatgaaaattatggtattctgtttgtaaacgta 125  Q
    ||||||||| ||||||||||||||||||||||| ||||||||||| |||||| ||| | ||| |||| ||| |||||| |||||||  | | |||| |||    
T  10267254 agagaaacacgtttagggcttggtatatataactaagtttacatgaaaattaaggtagccgagtttgtatggaaattagggtattccatctataaatgta 10267155  T
Q  126 ttaaataagtgtagaaaatattgt 149  Q
    ||||||||||||||||||||||||    
T  10267154 ttaaataagtgtagaaaatattgt 10267131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 36 - 138
Target Start/End: Complemental strand, 25938072 - 25937970
Alignment:
Q  36 gtttagggcttggtatatataaccaagtttacatggaaattagggtggtcgaatttgcatgaaaattatggtattctgtttgtaaacgtattaaataagt 135  Q
    |||||||| ||| ||||||||  | ||||| ||||||||||||||| | |||||||||||| |||||| |||||||||||||||||||||||||||||||    
T  25938072 gtttagggtttgttatatatagtcgagtttgcatggaaattagggtagccgaatttgcatggaaattagggtattctgtttgtaaacgtattaaataagt 25937973  T
Q  136 gta 138  Q
    |||    
T  25937972 gta 25937970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 25 - 198
Target Start/End: Original strand, 47502585 - 47502770
Alignment:
Q  25 gagagaaacatgtttagggcttggtatatataaccaagtttacatggaaattagggtggtcgaatttgcatgaaaattatggtattctgtttgtaaacgt 124  Q
    |||||||||| ||||||||||| |||| |||||| |||||||||||||||||||||| | ||| |||||||| ||||||   |||||| |||||||||||    
T  47502585 gagagaaacacgtttagggcttcgtatctataacgaagtttacatggaaattagggtagccgagtttgcatggaaattagaatattctatttgtaaacgt 47502684  T
Q  125 attaaa--------taagtgtagaaaatattgtc----nnnnnnnggcaacaggataggaatgaaataaaggcatgaaattggttc 198  Q
    ||||||        ||||||||||||||||||||            |||| |||||||||||||||||||||||||||||||||||    
T  47502685 attaaataattaagtaagtgtagaaaatattgtcaaaaaagaaaaagcaagaggataggaatgaaataaaggcatgaaattggttc 47502770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 27 - 115
Target Start/End: Complemental strand, 2730797 - 2730709
Alignment:
Q  27 gagaaacatgtttagggcttggtatatataaccaagtttacatggaaattagggtggtcgaatttgcatgaaaattatggtattctgtt 115  Q
    |||||||| ||||||||||||| |||||||||||||||||||||||||||||||| | ||| |||||||| |||||| |||||| ||||    
T  2730797 gagaaacacgtttagggcttggaatatataaccaagtttacatggaaattagggtagccgagtttgcatggaaattaaggtattttgtt 2730709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 50 - 149
Target Start/End: Complemental strand, 35560545 - 35560447
Alignment:
Q  50 atatataaccaagtttacatggaaattagggtggtcgaatttgcatgaaaattatggtattctgtttgtaaacgtattaaataagtgtagaaaatattgt 149  Q
    ||||||||||||||||||||| |||||||||| | ||| |||||||| ||||||  ||||||||||| ||||| ||||||||||||||| ||||||||||    
T  35560545 atatataaccaagtttacatgaaaattagggtagccgagtttgcatggaaattagagtattctgttt-taaacttattaaataagtgtaaaaaatattgt 35560447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 236 - 288
Target Start/End: Complemental strand, 11522977 - 11522925
Alignment:
Q  236 atgaaattagtgcgatgaatttttctggtattgtgtacaaaatattgtcaaaa 288  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  11522977 atgaaattagtgcgatgaatttttctagtattgtgtacaaaatattgtcaaaa 11522925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 36 - 138
Target Start/End: Complemental strand, 17756089 - 17755987
Alignment:
Q  36 gtttagggcttggtatatataaccaagtttacatggaaattagggtggtcgaatttgcatgaaaattatggtattctgtttgtaaacgtattaaataagt 135  Q
    |||||||| ||| |||||||| |  ||||| ||||||||||||||| | ||| |||||||| |||||| |||| |||  |||||||||||||||||||||    
T  17756089 gtttagggtttgctatatatagctgagtttgcatggaaattagggtagccgagtttgcatggaaattagggtagtctaattgtaaacgtattaaataagt 17755990  T
Q  136 gta 138  Q
    |||    
T  17755989 gta 17755987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 36 - 138
Target Start/End: Complemental strand, 19057409 - 19057307
Alignment:
Q  36 gtttagggcttggtatatataaccaagtttacatggaaattagggtggtcgaatttgcatgaaaattatggtattctgtttgtaaacgtattaaataagt 135  Q
    |||||||| ||| |||||||| |  ||||| ||||||||||||||| | ||| |||||||| |||||| |||| |||  |||||||||||||||||||||    
T  19057409 gtttagggtttgctatatatagctgagtttgcatggaaattagggtagccgagtttgcatggaaattagggtagtctaattgtaaacgtattaaataagt 19057310  T
Q  136 gta 138  Q
    |||    
T  19057309 gta 19057307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 49 - 138
Target Start/End: Complemental strand, 2469364 - 2469275
Alignment:
Q  49 tatatataaccaagtttacatggaaattagggtggtcgaatttgcatgaaaattatggtattctgtttgtaaacgtattaaataagtgta 138  Q
    |||||||| || |||||  ||||||||||||||  |||| |||||||| |||||| |||| ||| |||||||||||||||||||||||||    
T  2469364 tatatatacccgagtttctatggaaattagggtaatcgagtttgcatggaaattaaggtagtctatttgtaaacgtattaaataagtgta 2469275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 236 - 288
Target Start/End: Original strand, 38887236 - 38887288
Alignment:
Q  236 atgaaattagtgcgatgaatttttctggtattgtgtacaaaatattgtcaaaa 288  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||| ||||    
T  38887236 atgaaattagtgcgatgaatttttctagtattgtgtacaaaatattgtaaaaa 38887288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 36 - 132
Target Start/End: Complemental strand, 52301115 - 52301019
Alignment:
Q  36 gtttagggcttggtatatataaccaagtttacatggaaattagggtggtcgaatttgcatgaaaattatggtattctgtttgtaaacgtattaaata 132  Q
    |||||||||||||||||||||  |||||||| |||||||||||| |   |  ||||||||| |||||| |||| ||||||| |||||||||||||||    
T  52301115 gtttagggcttggtatatatagtcaagtttatatggaaattaggataaccagatttgcatggaaattagggtactctgtttctaaacgtattaaata 52301019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 36 - 138
Target Start/End: Original strand, 25917189 - 25917289
Alignment:
Q  36 gtttagggcttggtatatataaccaagtttacatggaaattagggtggtcgaatttgcatgaaaattatggtattctgtttgtaaacgtattaaataagt 135  Q
    |||||||| ||| ||||||||  | ||||| |||| ||||  |||| | ||| ||||| ||||||||| |||||||||||||||||||||||||||||||    
T  25917189 gtttagggtttgctatatatagtcgagtttgcatgaaaat--gggtagccgagtttgcgtgaaaattagggtattctgtttgtaaacgtattaaataagt 25917286  T
Q  136 gta 138  Q
    |||    
T  25917287 gta 25917289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 236 - 293
Target Start/End: Complemental strand, 2730598 - 2730541
Alignment:
Q  236 atgaaattagtgcgatgaatttttctggtattgtgtacaaaatattgtcaaaatgaaa 293  Q
    |||||||||||||||||||||||| | |||||||||||||| ||||||||||| ||||    
T  2730598 atgaaattagtgcgatgaatttttttagtattgtgtacaaattattgtcaaaaagaaa 2730541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 236 - 288
Target Start/End: Complemental strand, 18095368 - 18095316
Alignment:
Q  236 atgaaattagtgcgatgaatttttctggtattgtgtacaaaatattgtcaaaa 288  Q
    ||||||||||||| |||||||| ||| ||||||||||||||||||||||||||    
T  18095368 atgaaattagtgcaatgaatttgtctagtattgtgtacaaaatattgtcaaaa 18095316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 158 - 197
Target Start/End: Complemental strand, 2730677 - 2730638
Alignment:
Q  158 ggcaacaggataggaatgaaataaaggcatgaaattggtt 197  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  2730677 ggcaacaggataggaatgaaataaaggcatgaaattggtt 2730638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 89 - 138
Target Start/End: Original strand, 9240602 - 9240651
Alignment:
Q  89 tttgcatgaaaattatggtattctgtttgtaaacgtattaaataagtgta 138  Q
    |||||||| |||||  ||||||||||||||||||||||||||||||||||    
T  9240602 tttgcatggaaatttgggtattctgtttgtaaacgtattaaataagtgta 9240651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 81
Target Start/End: Original strand, 837012 - 837046
Alignment:
Q  47 ggtatatataaccaagtttacatggaaattagggt 81  Q
    |||||||||||||||||||||||||||||||||||    
T  837012 ggtatatataaccaagtttacatggaaattagggt 837046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 236 - 278
Target Start/End: Complemental strand, 10267041 - 10266999
Alignment:
Q  236 atgaaattagtgcgatgaatttttctggtattgtgtacaaaat 278  Q
    |||||||||||||||||||||||||| ||||| ||||||||||    
T  10267041 atgaaattagtgcgatgaatttttctagtattctgtacaaaat 10266999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 236 - 273
Target Start/End: Original strand, 20876906 - 20876943
Alignment:
Q  236 atgaaattagtgcgatgaatttttctggtattgtgtac 273  Q
    |||||||||||||||||||||||||| |||||||||||    
T  20876906 atgaaattagtgcgatgaatttttctagtattgtgtac 20876943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 93 - 138
Target Start/End: Original strand, 25716714 - 25716759
Alignment:
Q  93 catgaaaattatggtattctgtttgtaaacgtattaaataagtgta 138  Q
    |||| |||||| | ||||||||||||||||||||||||||||||||    
T  25716714 catgtaaattaggatattctgtttgtaaacgtattaaataagtgta 25716759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 158 - 194
Target Start/End: Complemental strand, 18095446 - 18095410
Alignment:
Q  158 ggcaacaggataggaatgaaataaaggcatgaaattg 194  Q
    ||||||| |||||||||||||||||||||||||||||    
T  18095446 ggcaacaagataggaatgaaataaaggcatgaaattg 18095410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 26 - 92
Target Start/End: Original strand, 9856272 - 9856339
Alignment:
Q  26 agagaaacat-gtttagggcttggtatatataaccaagtttacatggaaattagggtggtcgaatttg 92  Q
    |||||||||| |||||||| ||| |||||||| || ||||| ||||||||||||||| ||||| ||||    
T  9856272 agagaaacatagtttagggtttgctatatatagccgagtttgcatggaaattagggtagtcgagtttg 9856339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 158 - 197
Target Start/End: Complemental strand, 35560432 - 35560393
Alignment:
Q  158 ggcaacaggataggaatgaaataaaggcatgaaattggtt 197  Q
    ||||||| |||||||||||||||||||||| |||||||||    
T  35560432 ggcaacatgataggaatgaaataaaggcataaaattggtt 35560393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 81
Target Start/End: Complemental strand, 37760775 - 37760741
Alignment:
Q  47 ggtatatataaccaagtttacatggaaattagggt 81  Q
    |||||||||||||||||||||||| ||||||||||    
T  37760775 ggtatatataaccaagtttacatgaaaattagggt 37760741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 81
Target Start/End: Complemental strand, 46452473 - 46452439
Alignment:
Q  47 ggtatatataaccaagtttacatggaaattagggt 81  Q
    ||||||||||||||||||||||| |||||||||||    
T  46452473 ggtatatataaccaagtttacatagaaattagggt 46452439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 47 - 79
Target Start/End: Complemental strand, 43017563 - 43017531
Alignment:
Q  47 ggtatatataaccaagtttacatggaaattagg 79  Q
    ||||||||||||||||||||||| |||||||||    
T  43017563 ggtatatataaccaagtttacatagaaattagg 43017531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 104; Significance: 8e-52; HSPs: 38)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 25 - 197
Target Start/End: Complemental strand, 20709479 - 20709307
Alignment:
Q  25 gagagaaacatgtttagggcttggtatatataaccaagtttacatggaaattagggtggtcgaatttgcatgaaaattatggtattctgtttgtaaacgt 124  Q
    |||||||||| || |||||||||||||||||||||||||||||||||||||||||||    || ||||||||||||||| ||||||||||||||||||||    
T  20709479 gagagaaacacgtatagggcttggtatatataaccaagtttacatggaaattagggtatctgagtttgcatgaaaattagggtattctgtttgtaaacgt 20709380  T
Q  125 attaaataagtgtagaaaatattgtcnnnnnnnggcaacaggataggaatgaaataaaggcatgaaattggtt 197  Q
    ||||||||||||||||||||||| |        ||||||| ||||||||||||||||| ||||||||||||||    
T  20709379 attaaataagtgtagaaaatattataaaaaaaaggcaacaagataggaatgaaataaatgcatgaaattggtt 20709307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 26 - 194
Target Start/End: Original strand, 10128989 - 10129159
Alignment:
Q  26 agagaaacatgtttagggcttggtatatataaccaagtttacatggaaattagggtggtcgaatttgcatgaaaattatggtattctgtttgtaaacgta 125  Q
    ||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| ||||| |||||||| |||||| ||||||||||| |||||| ||    
T  10128989 agagaaacacgtttagggcttagtatatataaccaagtttacatggaaattagggtagtcgagtttgcatggaaattaaggtattctgttcgtaaacata 10129088  T
Q  126 ttaaataagtgtagaaaatattgtc--nnnnnnnggcaacaggataggaatgaaataaaggcatgaaattg 194  Q
    ||||||||||||| |||||||||||         ||||||| |||||||||||||||||||||||||||||    
T  10129089 ttaaataagtgtataaaatattgtcaaaaaaaatggcaacatgataggaatgaaataaaggcatgaaattg 10129159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 25 - 149
Target Start/End: Complemental strand, 11658122 - 11657998
Alignment:
Q  25 gagagaaacatgtttagggcttggtatatataaccaagtttacatggaaattagggtggtcgaatttgcatgaaaattatggtattctgtttgtaaacgt 124  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | ||| |||||||| ||||||  |||||||||||||||||||    
T  11658122 gagagaaacacgtttagggcttggtatatataaccaagtttacatggaaattagggtagccgagtttgcatggaaattagagtattctgtttgtaaacgt 11658023  T
Q  125 attaaataagtgtagaaaatattgt 149  Q
    |||||||||||||||||||||||||    
T  11658022 attaaataagtgtagaaaatattgt 11657998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 25 - 197
Target Start/End: Complemental strand, 17370555 - 17370381
Alignment:
Q  25 gagagaaacatgtttagggcttggtatatataaccaagtttacatggaaattagggtggtcgaatttgcatgaaaattatggtattctgtttgtaaacgt 124  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| || | ||| ||| || |||||||| ||||||||||||||||||||    
T  17370555 gagagaaacatgtttagggcttggtatatataaccaagtttacatggaaattagagtagccgagttttcaagaaaattaaggtattctgtttgtaaacgt 17370456  T
Q  125 attaaataagtgtagaaaatattgtc--nnnnnnnggcaacaggataggaatgaaataaaggcatgaaattggtt 197  Q
    ||| || | |||||||||||||||||         | ||||| ||||||||||||||||||||||||||||||||    
T  17370455 attgaaaaggtgtagaaaatattgtcaaaaaaaaagtcaacatgataggaatgaaataaaggcatgaaattggtt 17370381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 25 - 198
Target Start/End: Original strand, 14336028 - 14336200
Alignment:
Q  25 gagagaaacatgtttagggcttggtatatataaccaagtttacatggaaattagggtggtcgaatttgcatgaaaattatggtattctgtttgtaaacgt 124  Q
    |||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||| | ||| |||||||| ||||||  |||||||||||||||||||    
T  14336028 gagataaacacgtttagggcttggtatatataaccaagtttacatgaaaattagggtagccgagtttgcatggaaattagagtattctgtttgtaaacgt 14336127  T
Q  125 attaaataagtgtagaaaatattgtcnnnnnnnggcaacaggataggaatgaaataaaggcatgaaattggttc 198  Q
    |||||||| |||||||||||||| |        ||||||| |||| ||||||||||||||||||||||||||||    
T  14336128 attaaatatgtgtagaaaatattat-aaaaaaaggcaacaagatatgaatgaaataaaggcatgaaattggttc 14336200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 30 - 149
Target Start/End: Original strand, 20641287 - 20641406
Alignment:
Q  30 aaacatgtttagggcttggtatatataaccaagtttacatggaaattagggtggtcgaatttgcatgaaaattatggtattctgtttgtaaacgtattaa 129  Q
    ||||| ||||||||||||||||| |||||||||||||||||||||||||||| | ||| ||||||||||||||| |||||||||||||||||||||||||    
T  20641287 aaacacgtttagggcttggtataaataaccaagtttacatggaaattagggtagccgagtttgcatgaaaattagggtattctgtttgtaaacgtattaa 20641386  T
Q  130 ataagtgtagaaaatattgt 149  Q
    ||||||||||||| ||||||    
T  20641387 ataagtgtagaaattattgt 20641406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 26 - 198
Target Start/End: Original strand, 41995226 - 41995400
Alignment:
Q  26 agagaaacatgtttagggcttggtatatataaccaagtttacatggaaattagggtggtcgaatttgcatgaaaattatggtattctgtttgtaaacgta 125  Q
    ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| | | | |||||||| ||||||   |||||||||||||||||||    
T  41995226 agagaaacacgtttagggcttggtatatataaccaagtttacatagaaattagggtagccaagtttgcatggaaattagattattctgtttgtaaacgta 41995325  T
Q  126 ttaaataagtgtagaaaatattgtc--nnnnnnnggcaacaggataggaatgaaataaaggcatgaaattggttc 198  Q
    |||||||||||||||||||||||||         |||||||  ||||||||||||||||| ||||||||||||||    
T  41995326 ttaaataagtgtagaaaatattgtcaaaaaaaaaggcaacataataggaatgaaataaagacatgaaattggttc 41995400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 27 - 148
Target Start/End: Complemental strand, 11736670 - 11736549
Alignment:
Q  27 gagaaacatgtttagggcttggtatatataaccaagtttacatggaaattagggtggtcgaatttgcatgaaaattatggtattctgtttgtaaacgtat 126  Q
    |||||||| |||||| ||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||||||| ||||||||||||||||||||||    
T  11736670 gagaaacacgtttagagcttggtatatataaccaagtttacatggaaattagggtagccgagtttgcatgaaaattacggtattctgtttgtaaacgtat 11736571  T
Q  127 taaataagtgtagaaaatattg 148  Q
     |||||||  ||||||||||||    
T  11736570 caaataagcatagaaaatattg 11736549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 47 - 198
Target Start/End: Complemental strand, 12898528 - 12898374
Alignment:
Q  47 ggtatatataaccaagtttacatggaaattagggtggtcgaatttgcatgaaaattatggtattctgtttgtaaacgtattaaataagtgtagaaaatat 146  Q
    ||||||||||||||||||||||||||||||||||| | ||| ||||||||||||||| |||||||| ||| |||||||||||||||| ||||||||||||    
T  12898528 ggtatatataaccaagtttacatggaaattagggtagccgagtttgcatgaaaattagggtattctatttctaaacgtattaaataattgtagaaaatat 12898429  T
Q  147 tgtc---nnnnnnnggcaacaggataggaatgaaataaaggcatgaaattggttc 198  Q
    ||||          ||||||| |||||||||||||||||||||| ||||||||||    
T  12898428 tgtcaaaaaaaaaaggcaacatgataggaatgaaataaaggcataaaattggttc 12898374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 25 - 198
Target Start/End: Complemental strand, 41327043 - 41326864
Alignment:
Q  25 gagagaaacatgtttagggcttggtatatataaccaagtttacatggaaattagggtggtcgaatttgcatgaaaattatggtattctgtttgtaaacgt 124  Q
    |||||||||| ||||||||||||||||||||| || ||||| ||||||||||||||| | ||| |||||||| |||||| ||||||||||||||||||||    
T  41327043 gagagaaacacgtttagggcttggtatatatagccgagtttgcatggaaattagggtagccgagtttgcatggaaattagggtattctgtttgtaaacgt 41326944  T
Q  125 attaaataagtgtagaaaatattgt------cnnnnnnnggcaacaggataggaatgaaataaaggcatgaaattggttc 198  Q
    ||||||||| |||||||||| ||||              ||||||| |||||||||||||||||||||||||||||||||    
T  41326943 attaaataattgtagaaaatgttgtaaaaaaaaaaaaaaggcaacatgataggaatgaaataaaggcatgaaattggttc 41326864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 47 - 198
Target Start/End: Complemental strand, 29550623 - 29550471
Alignment:
Q  47 ggtatatataaccaagtttacatggaaattagggtggtcgaatttgcatgaaaattatggtattctgtttgtaaacgtattaaataagtgtagaaaatat 146  Q
    ||||||||||||||||||||||||||||||||||| | ||| |||||||| || | | ||||||||||||||||||||||||||||| ||||||||||||    
T  29550623 ggtatatataaccaagtttacatggaaattagggtagccgagtttgcatggaa-tcagggtattctgtttgtaaacgtattaaataaatgtagaaaatat 29550525  T
Q  147 tgtc--nnnnnnnggcaacaggataggaatgaaataaaggcatgaaattggttc 198  Q
    ||||         ||||||| |||||||||||||||||||||| ||||||||||    
T  29550524 tgtcaaaaaaaaaggcaacatgataggaatgaaataaaggcataaaattggttc 29550471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 25 - 150
Target Start/End: Original strand, 37130962 - 37131086
Alignment:
Q  25 gagagaaacatgtttagggcttggtatatataaccaagtttacatggaaattagggtggtcgaatttgcatgaaaattatggtattctgtttgtaaacgt 124  Q
    |||||||||| |||||||||||||||||||||||||||||||||| ||||||||| | | | | |||||||| |||||| |||||| | ||||||||| |    
T  37130962 gagagaaacacgtttagggcttggtatatataaccaagtttacat-gaaattaggatagccaagtttgcatgcaaattagggtattatatttgtaaacat 37131060  T
Q  125 attaaataagtgtagaaaatattgtc 150  Q
    ||||||||||||||||||||||||||    
T  37131061 attaaataagtgtagaaaatattgtc 37131086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 36 - 138
Target Start/End: Original strand, 15256314 - 15256416
Alignment:
Q  36 gtttagggcttggtatatataaccaagtttacatggaaattagggtggtcgaatttgcatgaaaattatggtattctgtttgtaaacgtattaaataagt 135  Q
    |||||||| ||| |||||||| |||||||| ||||||||||||||| | ||| |||||||| |||||| |||||||||||||||||||||||||||||||    
T  15256314 gtttagggtttgctatatatagccaagtttgcatggaaattagggtagccgagtttgcatggaaattagggtattctgtttgtaaacgtattaaataagt 15256413  T
Q  136 gta 138  Q
    |||    
T  15256414 gta 15256416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 73 - 197
Target Start/End: Complemental strand, 44256948 - 44256822
Alignment:
Q  73 aattagggtggtcgaatttgcatgaaaattatggtattctgtttgtaaacgtattaaataagtgtagaaaatattgt--cnnnnnnnggcaacaggatag 170  Q
    ||||||||| | ||| |||||||| |||||| |||||||| ||||||||| ||||||||||||||||||||||||||          ||||||| |||||    
T  44256948 aattagggtagccgagtttgcatggaaattagggtattctatttgtaaacatattaaataagtgtagaaaatattgtaaaaaaaaaaggcaacatgatag 44256849  T
Q  171 gaatgaaataaaggcatgaaattggtt 197  Q
    ||||||||||||||||| |||||||||    
T  44256848 gaatgaaataaaggcataaaattggtt 44256822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 26 - 138
Target Start/End: Original strand, 17930212 - 17930325
Alignment:
Q  26 agagaaacatg-tttagggcttggtatatataaccaagtttacatggaaattagggtggtcgaatttgcatgaaaattatggtattctgtttgtaaacgt 124  Q
    ||||||||||| ||||||| ||  |||||||| || ||||| |||||||||||||||   | | ||||||||||||||| |||||| |||||||||||||    
T  17930212 agagaaacatggtttagggttttctatatatatccgagtttgcatggaaattagggtacccaagtttgcatgaaaattagggtattatgtttgtaaacgt 17930311  T
Q  125 attaaataagtgta 138  Q
    ||||||||||||||    
T  17930312 attaaataagtgta 17930325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 49 - 138
Target Start/End: Original strand, 27351805 - 27351894
Alignment:
Q  49 tatatataaccaagtttacatggaaattagggtggtcgaatttgcatgaaaattatggtattctgtttgtaaacgtattaaataagtgta 138  Q
    |||||||| || ||||| ||||||||||||||| ||||| ||||||| || |||| ||||||||||||||||| ||||||||||||||||    
T  27351805 tatatatagccgagtttgcatggaaattagggtagtcgagtttgcataaatattagggtattctgtttgtaaatgtattaaataagtgta 27351894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 236 - 288
Target Start/End: Original strand, 41995437 - 41995489
Alignment:
Q  236 atgaaattagtgcgatgaatttttctggtattgtgtacaaaatattgtcaaaa 288  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  41995437 atgaaattagtgcgatgaatttttctagtattgtgtacaaaatattgtcaaaa 41995489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 36 - 138
Target Start/End: Original strand, 15253459 - 15253561
Alignment:
Q  36 gtttagggcttggtatatataaccaagtttacatggaaattagggtggtcgaatttgcatgaaaattatggtattctgtttgtaaacgtattaaataagt 135  Q
    |||||||| ||| |||| |||  | ||||| ||| ||||||| ||| ||||| |||||||| |||||| |||||||| ||||||||||||||||||||||    
T  15253459 gtttagggtttgctatacatagtcgagtttgcatcgaaattatggtagtcgagtttgcatggaaattaaggtattctatttgtaaacgtattaaataagt 15253558  T
Q  136 gta 138  Q
    |||    
T  15253559 gta 15253561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 71 - 138
Target Start/End: Complemental strand, 11131564 - 11131497
Alignment:
Q  71 gaaattagggtggtcgaatttgcatgaaaattatggtattctgtttgtaaacgtattaaataagtgta 138  Q
    ||||||| ||| | ||| ||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  11131564 gaaattatggtagccgagtttgcatgaaaattagggtattttgtttgtaaacgtattaaataagtgta 11131497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 234 - 288
Target Start/End: Complemental strand, 17370343 - 17370289
Alignment:
Q  234 gtatgaaattagtgcgatgaatttttctggtattgtgtacaaaatattgtcaaaa 288  Q
    |||| |||||| |||||||||||||||| ||||||||||||||||||||||||||    
T  17370343 gtataaaattaatgcgatgaatttttctagtattgtgtacaaaatattgtcaaaa 17370289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 236 - 288
Target Start/End: Original strand, 10129201 - 10129253
Alignment:
Q  236 atgaaattagtgcgatgaatttttctggtattgtgtacaaaatattgtcaaaa 288  Q
    ||||||||||||| |||||||||||| ||||||||||||||||||||| ||||    
T  10129201 atgaaattagtgcaatgaatttttctagtattgtgtacaaaatattgtaaaaa 10129253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 240 - 288
Target Start/End: Complemental strand, 11736323 - 11736275
Alignment:
Q  240 aattagtgcgatgaatttttctggtattgtgtacaaaatattgtcaaaa 288  Q
    |||||||| ||||||||||||| ||||||||||||||||||||||||||    
T  11736323 aattagtgggatgaatttttctagtattgtgtacaaaatattgtcaaaa 11736275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 236 - 288
Target Start/End: Complemental strand, 20709263 - 20709211
Alignment:
Q  236 atgaaattagtgcgatgaatttttctggtattgtgtacaaaatattgtcaaaa 288  Q
    ||||||||||||| |||||||||||| |||||||||| |||||||||||||||    
T  20709263 atgaaattagtgcaatgaatttttctagtattgtgtagaaaatattgtcaaaa 20709211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 236 - 288
Target Start/End: Complemental strand, 41326825 - 41326773
Alignment:
Q  236 atgaaattagtgcgatgaatttttctggtattgtgtacaaaatattgtcaaaa 288  Q
    |||||||||||||||||||||||||| ||||||||| ||||||||| ||||||    
T  41326825 atgaaattagtgcgatgaatttttctagtattgtgttcaaaatattatcaaaa 41326773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 89 - 138
Target Start/End: Original strand, 41075899 - 41075948
Alignment:
Q  89 tttgcatgaaaattatggtattctgtttgtaaacgtattaaataagtgta 138  Q
    |||||||| |||||| ||||||||||||| ||||||||||||||||||||    
T  41075899 tttgcatggaaattagggtattctgtttgcaaacgtattaaataagtgta 41075948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 89 - 138
Target Start/End: Original strand, 41076181 - 41076230
Alignment:
Q  89 tttgcatgaaaattatggtattctgtttgtaaacgtattaaataagtgta 138  Q
    |||||||| |||||| ||||||||||||| ||||||||||||||||||||    
T  41076181 tttgcatggaaattagggtattctgtttgcaaacgtattaaataagtgta 41076230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 236 - 288
Target Start/End: Original strand, 14336241 - 14336293
Alignment:
Q  236 atgaaattagtgcgatgaatttttctggtattgtgtacaaaatattgtcaaaa 288  Q
    ||||||||||||||||||||||||||  || ||||||||||||||||| ||||    
T  14336241 atgaaattagtgcgatgaatttttctaatactgtgtacaaaatattgtaaaaa 14336293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 236 - 288
Target Start/End: Original strand, 20641496 - 20641548
Alignment:
Q  236 atgaaattagtgcgatgaatttttctggtattgtgtacaaaatattgtcaaaa 288  Q
    ||||||||||||||||||| |||||  || |||||||||||||||||||||||    
T  20641496 atgaaattagtgcgatgaaattttcgagttttgtgtacaaaatattgtcaaaa 20641548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 241 - 288
Target Start/End: Complemental strand, 11657896 - 11657849
Alignment:
Q  241 attagtgcgatgaatttttctggtattgtgtacaaaatattgtcaaaa 288  Q
    ||||||||||||||||||||| ||||| ||||||||||||||| ||||    
T  11657896 attagtgcgatgaatttttctagtattttgtacaaaatattgtaaaaa 11657849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 30 - 79
Target Start/End: Original strand, 2132175 - 2132224
Alignment:
Q  30 aaacatgtttagggcttggtatatataaccaagtttacatggaaattagg 79  Q
    ||||| ||||||||||| || ||||||||||||||||||| |||||||||    
T  2132175 aaacacgtttagggcttagtttatataaccaagtttacatagaaattagg 2132224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 89 - 138
Target Start/End: Complemental strand, 24129639 - 24129590
Alignment:
Q  89 tttgcatgaaaattatggtattctgtttgtaaacgtattaaataagtgta 138  Q
    |||||||| ||||||  ||||||||||||||||| |||||||||||||||    
T  24129639 tttgcatggaaattagagtattctgtttgtaaacatattaaataagtgta 24129590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 89 - 138
Target Start/End: Original strand, 41075616 - 41075665
Alignment:
Q  89 tttgcatgaaaattatggtattctgtttgtaaacgtattaaataagtgta 138  Q
    |||||||| ||||||  ||||| |||||||||||||||||||||||||||    
T  41075616 tttgcatggaaattagagtattttgtttgtaaacgtattaaataagtgta 41075665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 236 - 288
Target Start/End: Original strand, 37131178 - 37131230
Alignment:
Q  236 atgaaattagtgcgatgaatttttctggtattgtgtacaaaatattgtcaaaa 288  Q
    |||||||||| |||||| ||||||||  |||||||||||||||||||| ||||    
T  37131178 atgaaattagcgcgatggatttttctaatattgtgtacaaaatattgtaaaaa 37131230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 166 - 197
Target Start/End: Complemental strand, 11657972 - 11657941
Alignment:
Q  166 gataggaatgaaataaaggcatgaaattggtt 197  Q
    ||||||||||||||||||||||||||||||||    
T  11657972 gataggaatgaaataaaggcatgaaattggtt 11657941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 81
Target Start/End: Complemental strand, 627876 - 627842
Alignment:
Q  47 ggtatatataaccaagtttacatggaaattagggt 81  Q
    |||||||||||||||||||||||||| ||||||||    
T  627876 ggtatatataaccaagtttacatggagattagggt 627842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 81
Target Start/End: Complemental strand, 6348366 - 6348332
Alignment:
Q  47 ggtatatataaccaagtttacatggaaattagggt 81  Q
    |||||||||||||||||||||||| ||||||||||    
T  6348366 ggtatatataaccaagtttacatgaaaattagggt 6348332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 81
Target Start/End: Original strand, 12896237 - 12896271
Alignment:
Q  47 ggtatatataaccaagtttacatggaaattagggt 81  Q
    |||||||||||||||||||||||| ||||||||||    
T  12896237 ggtatatataaccaagtttacatgaaaattagggt 12896271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 158 - 198
Target Start/End: Original strand, 37131101 - 37131141
Alignment:
Q  158 ggcaacaggataggaatgaaataaaggcatgaaattggttc 198  Q
    |||||||  |||||||||||||||||||||| |||||||||    
T  37131101 ggcaacaaaataggaatgaaataaaggcatggaattggttc 37131141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 103; Significance: 3e-51; HSPs: 35)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 26 - 198
Target Start/End: Original strand, 4099760 - 4099934
Alignment:
Q  26 agagaaacatgtttagggcttggtatatataaccaagtttacatggaaattagggtggtcgaatttgcatgaaaattatggtattctgtttgtaaacgta 125  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||| |||||| ||||||||||||||    
T  4099760 agagaaacacgtttagggcttggtatatataaccaagtttacatggaaattaggttagccgaatttgcatgaaaattagggtattttgtttgtaaacgta 4099859  T
Q  126 ttaaataagtgtagaaaatattgtc--nnnnnnnggcaacaggataggaatgaaataaaggcatgaaattggttc 198  Q
    ||||||||||||||||||||| |||         ||||||| ||||||||||||||||||| || ||||||||||    
T  4099860 ttaaataagtgtagaaaatatggtcagaaaaaaaggcaacatgataggaatgaaataaaggtataaaattggttc 4099934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 26 - 197
Target Start/End: Original strand, 32208102 - 32208273
Alignment:
Q  26 agagaaacatgtttagggcttggtatatataaccaagtttacatggaaattagggtggtcgaatttgcatgaaaattatggtattctgtttgtaaacgta 125  Q
    ||||||||| |||||| || |  |||||||||||||||||||||||| |||||||| | ||| |||| ||| ||||||  ||||||| ||||||||||||    
T  32208102 agagaaacacgtttagagcgtaatatatataaccaagtttacatggagattagggtagccgagtttgtatggaaattagcgtattctatttgtaaacgta 32208201  T
Q  126 ttaaataagtgtagaaaatattgtcnnnnnnnggcaacaggataggaatgaaataaaggcatgaaattggtt 197  Q
    | |||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||    
T  32208202 tcaaataagtgtagaaaatattgtcaaaaaaaggcaacaggataggaatgaaataaaggcatgaaattggtt 32208273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 25 - 149
Target Start/End: Complemental strand, 23622882 - 23622758
Alignment:
Q  25 gagagaaacatgtttagggcttggtatatataaccaagtttacatggaaattagggtggtcgaatttgcatgaaaattatggtattctgtttgtaaacgt 124  Q
    |||||||||| ||||||||||||||||||||||  ||||||| |||||||||||||| ||||| |||||||| |||||| |||||||| |||||||||||    
T  23622882 gagagaaacacgtttagggcttggtatatataatgaagtttatatggaaattagggtagtcgagtttgcatggaaattagggtattctttttgtaaacgt 23622783  T
Q  125 attaaataagtgtagaaaatattgt 149  Q
    |||||||||||||||||||||||||    
T  23622782 attaaataagtgtagaaaatattgt 23622758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 26 - 149
Target Start/End: Complemental strand, 809587 - 809464
Alignment:
Q  26 agagaaacatgtttagggcttggtatatataaccaagtttacatggaaattagggtggtcgaatttgcatgaaaattatggtattctgtttgtaaacgta 125  Q
    ||||||||| |||||||||||||||||||||||||| |||||| |||||||||||| | | | ||||||||||||||| |||||||||||||||||||||    
T  809587 agagaaacacgtttagggcttggtatatataaccaattttacacggaaattagggtagccaagtttgcatgaaaattaaggtattctgtttgtaaacgta 809488  T
Q  126 ttaaataagtgtagaaaatattgt 149  Q
    |||||||||||||||||| |||||    
T  809487 ttaaataagtgtagaaaacattgt 809464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 26 - 198
Target Start/End: Complemental strand, 17203458 - 17203283
Alignment:
Q  26 agagaaacatgtttagggcttggtatatataaccaagtttacatggaaattagggtggtcgaatttgcatgaaaattatggtattctgtttgtaaacgta 125  Q
    |||||||||  ||||||| ||||||||||||||||||||||||||||||||||||| | ||| |||||||| |||||| |||||||||||||||||||||    
T  17203458 agagaaacacatttagggattggtatatataaccaagtttacatggaaattagggtagccgagtttgcatggaaattagggtattctgtttgtaaacgta 17203359  T
Q  126 ttaaataagtgtagaaaatattgtc----nnnnnnnggcaacaggataggaatgaaataaaggcatgaaattggttc 198  Q
    |||||||||||||  ||||||||||           ||||||| |||| ||||||||||||||||||||||||||||    
T  17203358 ttaaataagtgtaacaaatattgtcaaaaaatagaaggcaacatgata-gaatgaaataaaggcatgaaattggttc 17203283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 25 - 197
Target Start/End: Complemental strand, 29202062 - 29201889
Alignment:
Q  25 gagagaaacatgtttagggcttggtatatataaccaagtttacatggaaattagggtggtcgaatttgcatgaaaattatggtattctgtttgtaaacgt 124  Q
    |||| ||||| ||||| ||||||||||||||||||||||||||||| |||||||||| | ||| |||||||| |||||| |||||||||||||||||| |    
T  29202062 gagataaacacgtttatggcttggtatatataaccaagtttacatgaaaattagggtagccgagtttgcatggaaattagggtattctgtttgtaaacat 29201963  T
Q  125 attaaataagtgtagaaaatattgtc-nnnnnnnggcaacaggataggaatgaaataaaggcatgaaattggtt 197  Q
    ||||||||| ||||||||||||||||        | ||||| | |||||||||||||||| |||||||||||||    
T  29201962 attaaataaatgtagaaaatattgtcaaaaaaaagacaacatggtaggaatgaaataaagacatgaaattggtt 29201889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 28 - 147
Target Start/End: Original strand, 17906271 - 17906390
Alignment:
Q  28 agaaacatgtttagggcttggtatatataaccaagtttacatggaaattagggtggtcgaatttgcatgaaaattatggtattctgtttgtaaacgtatt 127  Q
    |||||||  |||||||||||||||||||||||||||||||||||||||| |||| | ||| |||||||| |||||| |||||| ||||||||||||||||    
T  17906271 agaaacacatttagggcttggtatatataaccaagtttacatggaaattcgggtagccgagtttgcatggaaattagggtattatgtttgtaaacgtatt 17906370  T
Q  128 aaataagtgtagaaaatatt 147  Q
    ||||||||||||||||||||    
T  17906371 aaataagtgtagaaaatatt 17906390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 26 - 147
Target Start/End: Original strand, 26831986 - 26832107
Alignment:
Q  26 agagaaacatgtttagggcttggtatatataaccaagtttacatggaaattagggtggtcgaatttgcatgaaaattatggtattctgtttgtaaacgta 125  Q
    ||||||||| |||||||| |||||||||||||| ||||||| |||||||||| ||| | | | |||||||| |||||| | |||||||||||||||||||    
T  26831986 agagaaacacgtttagggtttggtatatataacaaagtttaaatggaaattacggtagcctagtttgcatggaaattaagatattctgtttgtaaacgta 26832085  T
Q  126 ttaaataagtgtagaaaatatt 147  Q
    ||||||||||||||||||||||    
T  26832086 ttaaataagtgtagaaaatatt 26832107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 89 - 198
Target Start/End: Complemental strand, 34294451 - 34294341
Alignment:
Q  89 tttgcatgaaaattatggtattctgtttgtaaacgtattaaataagtgtagaaaata-ttgtcnnnnnnnggcaacaggataggaatgaaataaaggcat 187  Q
    ||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| || |        ||||||| ||||||||||||||||||||||    
T  34294451 tttgcatgaaaattagggtattctgtttgtaaacatattaaataagtgtagaaaatattttttaaaaaaaggcaacaagataggaatgaaataaaggcat 34294352  T
Q  188 gaaattggttc 198  Q
    |||||||||||    
T  34294351 gaaattggttc 34294341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 89 - 197
Target Start/End: Complemental strand, 809425 - 809315
Alignment:
Q  89 tttgcatgaaaattatggtattctgtttgtaaacgtattaaataagtgtagaaaatattgt--cnnnnnnnggcaacaggataggaatgaaataaaggca 186  Q
    ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||          ||||||| |||||| ||||||||||||||    
T  809425 tttgcatgaaaattaaggtactctgtttgtaaacgtattaaataagtgtagaaaatattgtaaaaaaaaaaggcaacatgataggtatgaaataaaggca 809326  T
Q  187 tgaaattggtt 197  Q
    |||||| ||||    
T  809325 tgaaataggtt 809315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 236 - 293
Target Start/End: Complemental strand, 17203239 - 17203182
Alignment:
Q  236 atgaaattagtgcgatgaatttttctggtattgtgtacaaaatattgtcaaaatgaaa 293  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  17203239 atgaaattagtgcgatgaatttttctggtattgtgtacaaaatattgtcaaaaagaaa 17203182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 236 - 288
Target Start/End: Original strand, 4099972 - 4100024
Alignment:
Q  236 atgaaattagtgcgatgaatttttctggtattgtgtacaaaatattgtcaaaa 288  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  4099972 atgaaattagtgcgatgaatttttctagtattgtgtacaaaatattgtcaaaa 4100024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 58 - 138
Target Start/End: Original strand, 33482144 - 33482224
Alignment:
Q  58 ccaagtttacatggaaattagggtggtcgaatttgcatgaaaattatggtattctgtttgtaaacgtattaaataagtgta 138  Q
    ||||||||  |||||||||||||| | ||| |||| |||||||||| ||||||||| ||||||||||||||||||||||||    
T  33482144 ccaagtttgaatggaaattagggtagccgagtttgaatgaaaattagggtattctggttgtaaacgtattaaataagtgta 33482224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 236 - 288
Target Start/End: Complemental strand, 23622664 - 23622612
Alignment:
Q  236 atgaaattagtgcgatgaatttttctggtattgtgtacaaaatattgtcaaaa 288  Q
    |||||||||||||||||||||||||| ||||| ||||||||||||||||||||    
T  23622664 atgaaattagtgcgatgaatttttctagtattttgtacaaaatattgtcaaaa 23622612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 105 - 149
Target Start/End: Complemental strand, 23902704 - 23902660
Alignment:
Q  105 ggtattctgtttgtaaacgtattaaataagtgtagaaaatattgt 149  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  23902704 ggtattctgtttgtaaacgtattaaataagtgtagaaaatattgt 23902660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 99 - 150
Target Start/End: Complemental strand, 17011477 - 17011426
Alignment:
Q  99 aattatggtattctgtttgtaaacgtattaaataagtgtagaaaatattgtc 150  Q
    ||||| |||||||||||||||||||| |||||||||||||||||||||||||    
T  17011477 aattagggtattctgtttgtaaacgtgttaaataagtgtagaaaatattgtc 17011426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 234 - 288
Target Start/End: Complemental strand, 34294305 - 34294251
Alignment:
Q  234 gtatgaaattagtgcgatgaatttttctggtattgtgtacaaaatattgtcaaaa 288  Q
    ||||||||||||| |||| ||||||||| ||||||||||||||||||||||||||    
T  34294305 gtatgaaattagtccgataaatttttctagtattgtgtacaaaatattgtcaaaa 34294251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 236 - 288
Target Start/End: Original strand, 26832200 - 26832252
Alignment:
Q  236 atgaaattagtgcgatgaatttttctggtattgtgtacaaaatattgtcaaaa 288  Q
    ||||||||||||||||||||||||||  | |||||||||||||||||||||||    
T  26832200 atgaaattagtgcgatgaatttttctaatgttgtgtacaaaatattgtcaaaa 26832252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 236 - 287
Target Start/End: Original strand, 17906482 - 17906533
Alignment:
Q  236 atgaaattagtgcgatgaatttttctggtattgtgtacaaaatattgtcaaa 287  Q
    |||||||||  ||||||||||||||| |||||||||||||||||||||||||    
T  17906482 atgaaattatggcgatgaatttttctagtattgtgtacaaaatattgtcaaa 17906533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 234 - 288
Target Start/End: Complemental strand, 809278 - 809224
Alignment:
Q  234 gtatgaaattagtgcgatgaatttttctggtattgtgtacaaaatattgtcaaaa 288  Q
    |||||||||||||||||||||||||||| | |||||||| | |||||||||||||    
T  809278 gtatgaaattagtgcgatgaatttttctagcattgtgtagagaatattgtcaaaa 809224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 234 - 288
Target Start/End: Complemental strand, 1393882 - 1393828
Alignment:
Q  234 gtatgaaattagtgcgatgaatttttctggtattgtgtacaaaatattgtcaaaa 288  Q
    |||||| ||||||||||| ||||||||| ||||||||||||||||||||| ||||    
T  1393882 gtatgacattagtgcgattaatttttctagtattgtgtacaaaatattgtaaaaa 1393828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 89 - 138
Target Start/End: Original strand, 16799304 - 16799353
Alignment:
Q  89 tttgcatgaaaattatggtattctgtttgtaaacgtattaaataagtgta 138  Q
    ||||||||||||||| |||||| |||||||||| ||||||||||||||||    
T  16799304 tttgcatgaaaattagggtattatgtttgtaaatgtattaaataagtgta 16799353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 89 - 138
Target Start/End: Original strand, 17073121 - 17073170
Alignment:
Q  89 tttgcatgaaaattatggtattctgtttgtaaacgtattaaataagtgta 138  Q
    ||||||||||||||| |||||| |||||||||| ||||||||||||||||    
T  17073121 tttgcatgaaaattagggtattttgtttgtaaatgtattaaataagtgta 17073170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 47 - 88
Target Start/End: Complemental strand, 25068485 - 25068444
Alignment:
Q  47 ggtatatataaccaagtttacatggaaattagggtggtcgaa 88  Q
    ||||||||||||||||||||||||||||||||||| ||||||    
T  25068485 ggtatatataaccaagtttacatggaaattagggtagtcgaa 25068444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 239 - 288
Target Start/End: Complemental strand, 29201847 - 29201798
Alignment:
Q  239 aaattagtgcgatgaatttttctggtattgtgtacaaaatattgtcaaaa 288  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||| ||||    
T  29201847 aaattagtgcgatgaatttttctagtattatgtacaaaatattgtaaaaa 29201798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 158 - 197
Target Start/End: Complemental strand, 1393957 - 1393918
Alignment:
Q  158 ggcaacaggataggaatgaaataaaggcatgaaattggtt 197  Q
    ||||||| ||||||||||||||||||||||||||||||||    
T  1393957 ggcaacatgataggaatgaaataaaggcatgaaattggtt 1393918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 81
Target Start/End: Original strand, 4810877 - 4810911
Alignment:
Q  47 ggtatatataaccaagtttacatggaaattagggt 81  Q
    |||||||||||||||||||||||||||||||||||    
T  4810877 ggtatatataaccaagtttacatggaaattagggt 4810911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 138
Target Start/End: Original strand, 24222904 - 24223018
Alignment:
Q  25 gagagaaacatg-tttagggcttggtatatataaccaagtttacatggaaattagggtggtcgaatttgcatgaaaattatggtattctgtttgtaaacg 123  Q
    |||||||||||| |||| || ||| |||||||  || |||||  ||| ||||||||   | ||| ||||||||||||||  |||||| ||||| ||||||    
T  24222904 gagagaaacatgatttaaggtttgctatatatcgccgagtttgaatgaaaattaggagagccgagtttgcatgaaaattggggtattatgtttttaaacg 24223003  T
Q  124 tattaaataagtgta 138  Q
    |||||||||||||||    
T  24223004 tattaaataagtgta 24223018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 97 - 150
Target Start/End: Complemental strand, 17080456 - 17080403
Alignment:
Q  97 aaaattatggtattctgtttgtaaacgtattaaataagtgtagaaaatattgtc 150  Q
    ||||||| |||||| ||||||||||||| ||||||||||||| ||||| |||||    
T  17080456 aaaattagggtattttgtttgtaaacgtgttaaataagtgtacaaaattttgtc 17080403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 160 - 197
Target Start/End: Complemental strand, 23622739 - 23622702
Alignment:
Q  160 caacaggataggaatgaaataaaggcatgaaattggtt 197  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  23622739 caacatgataggaatgaaataaaggcatgaaattggtt 23622702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 138
Target Start/End: Original strand, 24223334 - 24223374
Alignment:
Q  98 aaattatggtattctgtttgtaaacgtattaaataagtgta 138  Q
    |||||| ||||||||||||||||| ||||||||||||||||    
T  24223334 aaattagggtattctgtttgtaaatgtattaaataagtgta 24223374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 81
Target Start/End: Complemental strand, 34294477 - 34294433
Alignment:
Q  37 tttagggcttggtatatataaccaagtttacatggaaattagggt 81  Q
    ||||| ||||||||||||||||||||||| |||| ||||||||||    
T  34294477 tttagcgcttggtatatataaccaagtttgcatgaaaattagggt 34294433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 105 - 144
Target Start/End: Complemental strand, 17080491 - 17080452
Alignment:
Q  105 ggtattctgtttgtaaacgtattaaataagtgtagaaaat 144  Q
    |||||| ||||||||||||||||||||||||||| |||||    
T  17080491 ggtattttgtttgtaaacgtattaaataagtgtataaaat 17080452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 166 - 197
Target Start/End: Original strand, 17906411 - 17906442
Alignment:
Q  166 gataggaatgaaataaaggcatgaaattggtt 197  Q
    ||||||||||||||||||||||||||||||||    
T  17906411 gataggaatgaaataaaggcatgaaattggtt 17906442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 81
Target Start/End: Complemental strand, 9829215 - 9829181
Alignment:
Q  47 ggtatatataaccaagtttacatggaaattagggt 81  Q
    ||||||||||||||||||||||| |||||||||||    
T  9829215 ggtatatataaccaagtttacatagaaattagggt 9829181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 98; Significance: 3e-48; HSPs: 30)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 25 - 198
Target Start/End: Complemental strand, 34948128 - 34947957
Alignment:
Q  25 gagagaaacatgtttagggcttggtatatataaccaagtttacatggaaattagggtggtcgaatttgcatgaaaattatggtattctgtttgtaaacgt 124  Q
    ||||||||||||||||||||||| ||||||||||||||||||||| |||||| |||| | ||| ||||||||||||||||| ||||||||||||||||||    
T  34948128 gagagaaacatgtttagggcttgttatatataaccaagtttacatagaaatttgggtagccgagtttgcatgaaaattatgatattctgtttgtaaacgt 34948029  T
Q  125 attaaataagtgtagaaaatattgtcnnnnnnnggcaacaggataggaatgaaataaaggcatgaaattggttc 198  Q
    |||||||  |||||||||||||||||       || ||| | ||||||||||||||||| ||||||||||||||    
T  34948028 attaaat--gtgtagaaaatattgtcaaaaaaaggtaactgaataggaatgaaataaagacatgaaattggttc 34947957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 25 - 197
Target Start/End: Complemental strand, 9389387 - 9389214
Alignment:
Q  25 gagagaaacatgtttagggcttggtatatataaccaagtttacatggaaattagggtggtcgaatttgcatgaaaattatggtattctgtttgtaaacgt 124  Q
    |||||||||| ||||||||||||||||||||||||||||||||||| |||||| ||| | ||| ||||||||||||||| |||||||| |||||||||||    
T  9389387 gagagaaacacgtttagggcttggtatatataaccaagtttacatgaaaattaaggtagccgagtttgcatgaaaattagggtattctatttgtaaacgt 9389288  T
Q  125 attaaataagtgtagaaaatattgt-cnnnnnnnggcaacaggataggaatgaaataaaggcatgaaattggtt 197  Q
    |||||| || |||||||||||||||          ||||||||||| ||||||||||||||||| |||||||||    
T  9389287 attaaaaaaatgtagaaaatattgtaaaaaaaaaagcaacaggatatgaatgaaataaaggcataaaattggtt 9389214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 25 - 197
Target Start/End: Complemental strand, 13797859 - 13797682
Alignment:
Q  25 gagagaaacatgtttagggcttggtatatataaccaagtttacatggaaattagggtggtcgaatttgcatgaaaattatggtattctgtttgtaaacgt 124  Q
    |||||||||| |||||||||||| ||||||||||||| |||||||||||||||| || | ||| |||||||| ||||||   ||||||||||||||||||    
T  13797859 gagagaaacacgtttagggcttgatatatataaccaaatttacatggaaattagtgtagccgagtttgcatggaaattagtatattctgtttgtaaacgt 13797760  T
Q  125 attaaataagtgtagaaaatattgtc-----nnnnnnnggcaacaggataggaatgaaataaaggcatgaaattggtt 197  Q
    ||||||||||||||||||||||||||            ||||||| ||||||||||||||||||||||||||||||||    
T  13797759 attaaataagtgtagaaaatattgtcaaaaaaaaaaaaggcaacatgataggaatgaaataaaggcatgaaattggtt 13797682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 26 - 198
Target Start/End: Original strand, 23960107 - 23960284
Alignment:
Q  26 agagaaacatgtttagggcttggtatatataaccaagtttacatggaaattagggtggtcgaatttgcatgaaaattatggtattctgtttgtaaacgta 125  Q
    ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| | | |||| ||| |||||| |||||| ||||||||||||||    
T  23960107 agagaaacatgtttaggacttggtatatataaccaagttaacatggaaattagggtggccaagtttgtatggaaattagggtattatgtttgtaaacgta 23960206  T
Q  126 ttaaataagtgtagaaaatattgtc-----nnnnnnnggcaacaggataggaatgaaataaaggcatgaaattggttc 198  Q
    ||||||| |||||||||||||||||            ||||| |||||| ||||||||||||||||||||||||||||    
T  23960207 ttaaatacgtgtagaaaatattgtcaaaaataaaaaaggcaataggatacgaatgaaataaaggcatgaaattggttc 23960284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 47 - 198
Target Start/End: Complemental strand, 3990692 - 3990538
Alignment:
Q  47 ggtatatataaccaagtttacatggaaattagggtggtcgaatttgcatgaaaattatggtattctgtttgtaaacgtattaaataagtgtagaaaatat 146  Q
    |||||||||||| |||||||||||||||||||||| | ||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  3990692 ggtatatataactaagtttacatggaaattagggtagccgagtttgcatgaaaattagggtattctgtttgtaaacgtattaaataagtgtagaaaatat 3990593  T
Q  147 tgtc---nnnnnnnggcaacaggataggaatgaaataaaggcatgaaattggttc 198  Q
    ||||          ||||||| | |||||||||||||||||||| ||||||||||    
T  3990592 tgtcaaaaaaaaaaggcaacatggtaggaatgaaataaaggcataaaattggttc 3990538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 26 - 197
Target Start/End: Complemental strand, 30206402 - 30206227
Alignment:
Q  26 agagaaacatgtttagggcttggtatatataaccaagtttacatggaaattagggtggtcgaatttgcatgaaaattatggtattctgtttgtaaacgta 125  Q
    ||||||| | |||||| |||||||||||||||||||||||||||| |||||||||| | ||| |||||||| |||||| |||||||||||||||||||||    
T  30206402 agagaaaaacgtttagagcttggtatatataaccaagtttacatgaaaattagggtagccgagtttgcatggaaattagggtattctgtttgtaaacgta 30206303  T
Q  126 ttaaataagtgtagaaaatattgt----cnnnnnnnggcaacaggataggaatgaaataaaggcatgaaattggtt 197  Q
    ||||||||||||||||||||| ||             ||||| |||||||||||||||||||||||||||||||||    
T  30206302 ttaaataagtgtagaaaatatggtaaaaaaaaaaaaagcaacgggataggaatgaaataaaggcatgaaattggtt 30206227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 89 - 198
Target Start/End: Original strand, 30437641 - 30437753
Alignment:
Q  89 tttgcatgaaaattatggtattctgtttgtaaacgtattaaataagtgtagaaaatattgtc---nnnnnnnggcaacaggataggaatgaaataaaggc 185  Q
    |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||          ||||||| |||||||||||| ||||||     
T  30437641 tttgcatggaaattatggtattttgtttgtaaacgtattaaataagtgtagaaaatattgtcaaaaaaaaaaggcaacatgataggaatgaattaaaggt 30437740  T
Q  186 atgaaattggttc 198  Q
    |||||||||||||    
T  30437741 atgaaattggttc 30437753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 26 - 81
Target Start/End: Original strand, 27853180 - 27853235
Alignment:
Q  26 agagaaacatgtttagggcttggtatatataaccaagtttacatggaaattagggt 81  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27853180 agagaaacatgtttagggcttggtatatataaccaagtttacatggaaattagggt 27853235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 36 - 143
Target Start/End: Original strand, 38294730 - 38294837
Alignment:
Q  36 gtttagggcttggtatatataaccaagtttacatggaaattagggtggtcgaatttgcatgaaaattatggtattctgtttgtaaacgtattaaataagt 135  Q
    |||||||| ||| ||||||||  | |||||  |||||||||||||| | ||| |||||||  |||||| |||||||||||||||||||||||||||||||    
T  38294730 gtttagggtttgctatatatagtcgagtttgtatggaaattagggtagccgagtttgcatagaaattagggtattctgtttgtaaacgtattaaataagt 38294829  T
Q  136 gtagaaaa 143  Q
    ||| ||||    
T  38294830 gtaaaaaa 38294837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 68 - 149
Target Start/End: Complemental strand, 44014955 - 44014874
Alignment:
Q  68 atggaaattagggtggtcgaatttgcatgaaaattatggtattctgtttgtaaacgtattaaataagtgtagaaaatattgt 149  Q
    |||||||||||||| | | | |||||||| |||||| |||||||| |||||||||||||| |||||||||||||||||||||    
T  44014955 atggaaattagggtagccaagtttgcatggaaattagggtattctatttgtaaacgtatttaataagtgtagaaaatattgt 44014874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 89 - 149
Target Start/End: Complemental strand, 23086237 - 23086177
Alignment:
Q  89 tttgcatgaaaattatggtattctgtttgtaaacgtattaaataagtgtagaaaatattgt 149  Q
    ||||||||||||||| |||||| ||||||||| ||||||||||||||||||||||||||||    
T  23086237 tttgcatgaaaattagggtattatgtttgtaagcgtattaaataagtgtagaaaatattgt 23086177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 28 - 92
Target Start/End: Complemental strand, 38111592 - 38111528
Alignment:
Q  28 agaaacatgtttagggcttggtatatataaccaagtttacatggaaattagggtggtcgaatttg 92  Q
    ||||||| ||||||||||||||||||||||||||||||||||| |||||||||| | ||||||||    
T  38111592 agaaacacgtttagggcttggtatatataaccaagtttacatgaaaattagggtagccgaatttg 38111528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 36 - 138
Target Start/End: Original strand, 31249109 - 31249211
Alignment:
Q  36 gtttagggcttggtatatataaccaagtttacatggaaattagggtggtcgaatttgcatgaaaattatggtattctgtttgtaaacgtattaaataagt 135  Q
    |||||||| ||| |||||||| || | ||  ||||||||||||||    ||| |||||||| |||||| |||||||||||||||||||||||||||||||    
T  31249109 gtttagggtttgctatatatagccgacttcgcatggaaattagggcaaccgagtttgcatggaaattagggtattctgtttgtaaacgtattaaataagt 31249208  T
Q  136 gta 138  Q
    |||    
T  31249209 gta 31249211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 236 - 288
Target Start/End: Complemental strand, 9389177 - 9389125
Alignment:
Q  236 atgaaattagtgcgatgaatttttctggtattgtgtacaaaatattgtcaaaa 288  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| ||||||    
T  9389177 atgaaattagtgcgatgaatttttctagtattgtgtacaaaatattctcaaaa 9389125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 93 - 149
Target Start/End: Original strand, 27853221 - 27853277
Alignment:
Q  93 catgaaaattatggtattctgtttgtaaacgtattaaataagtgtagaaaatattgt 149  Q
    |||| |||||| ||||||||||||||||||||||||||||||||| |||||||||||    
T  27853221 catggaaattagggtattctgtttgtaaacgtattaaataagtgtggaaaatattgt 27853277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 236 - 288
Target Start/End: Original strand, 30437796 - 30437848
Alignment:
Q  236 atgaaattagtgcgatgaatttttctggtattgtgtacaaaatattgtcaaaa 288  Q
    |||||||||||||||||||||||||| ||||||| ||||||||||||||||||    
T  30437796 atgaaattagtgcgatgaatttttctagtattgtatacaaaatattgtcaaaa 30437848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 105 - 150
Target Start/End: Original strand, 1276402 - 1276447
Alignment:
Q  105 ggtattctgtttgtaaacgtattaaataagtgtagaaaatattgtc 150  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||    
T  1276402 ggtattctgtttgtaaacgtattaaataagtgtagaatatattgtc 1276447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 240 - 288
Target Start/End: Complemental strand, 23086083 - 23086035
Alignment:
Q  240 aattagtgcgatgaatttttctggtattgtgtacaaaatattgtcaaaa 288  Q
    ||||||| |||||||||||||| ||||||||||||||||||||||||||    
T  23086083 aattagttcgatgaatttttctagtattgtgtacaaaatattgtcaaaa 23086035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 236 - 288
Target Start/End: Original strand, 27853358 - 27853410
Alignment:
Q  236 atgaaattagtgcgatgaatttttctggtattgtgtacaaaatattgtcaaaa 288  Q
    ||||| |||||||||||||||||||| ||||||||||||||||||||| ||||    
T  27853358 atgaagttagtgcgatgaatttttctagtattgtgtacaaaatattgtaaaaa 27853410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 236 - 279
Target Start/End: Complemental strand, 1198290 - 1198247
Alignment:
Q  236 atgaaattagtgcgatgaatttttctggtattgtgtacaaaata 279  Q
    |||||||||||||||||||||||||| |||||||||||||||||    
T  1198290 atgaaattagtgcgatgaatttttctagtattgtgtacaaaata 1198247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 87 - 144
Target Start/End: Complemental strand, 14683260 - 14683203
Alignment:
Q  87 aatttgcatgaaaattatggtattctgtttgtaaacgtattaaataagtgtagaaaat 144  Q
    ||||| |||| |||||| | |||||||||||||||| |||||||||||||||||||||    
T  14683260 aatttacatggaaattaggatattctgtttgtaaacatattaaataagtgtagaaaat 14683203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 48 - 88
Target Start/End: Original strand, 3458947 - 3458987
Alignment:
Q  48 gtatatataaccaagtttacatggaaattagggtggtcgaa 88  Q
    |||||||||||||||||||||||||||||||||| ||||||    
T  3458947 gtatatataaccaagtttacatggaaattagggtagtcgaa 3458987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 158 - 198
Target Start/End: Original strand, 23828259 - 23828299
Alignment:
Q  158 ggcaacaggataggaatgaaataaaggcatgaaattggttc 198  Q
    ||||||||||||||||||||||||| |||||||||||||||    
T  23828259 ggcaacaggataggaatgaaataaaagcatgaaattggttc 23828299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 236 - 288
Target Start/End: Complemental strand, 30206192 - 30206140
Alignment:
Q  236 atgaaattagtgcgatgaatttttctggtattgtgtacaaaatattgtcaaaa 288  Q
    |||||||||||||||| ||||||||| |||||||||| ||||||| |||||||    
T  30206192 atgaaattagtgcgattaatttttctagtattgtgtataaaatatagtcaaaa 30206140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 236 - 288
Target Start/End: Complemental strand, 34947919 - 34947867
Alignment:
Q  236 atgaaattagtgcgatgaatttttctggtattgtgtacaaaatattgtcaaaa 288  Q
    |||||||||||||| ||||||||| | ||||||||| ||||||||||||||||    
T  34947919 atgaaattagtgcggtgaatttttttagtattgtgttcaaaatattgtcaaaa 34947867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 158 - 197
Target Start/End: Complemental strand, 1198368 - 1198329
Alignment:
Q  158 ggcaacaggataggaatgaaataaaggcatgaaattggtt 197  Q
    ||||||| ||||||||||||||||||||||||||||||||    
T  1198368 ggcaacaagataggaatgaaataaaggcatgaaattggtt 1198329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 81
Target Start/End: Original strand, 37197489 - 37197523
Alignment:
Q  47 ggtatatataaccaagtttacatggaaattagggt 81  Q
    |||||||||||||||||||||||||||||||||||    
T  37197489 ggtatatataaccaagtttacatggaaattagggt 37197523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 158 - 197
Target Start/End: Original strand, 23831069 - 23831108
Alignment:
Q  158 ggcaacaggataggaatgaaataaaggcatgaaattggtt 197  Q
    ||||||| |||||||||||||||||||||||||| |||||    
T  23831069 ggcaacatgataggaatgaaataaaggcatgaaactggtt 23831108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 114 - 149
Target Start/End: Complemental strand, 38111531 - 38111496
Alignment:
Q  114 tttgtaaacgtattaaataagtgtagaaaatattgt 149  Q
    |||||||||||||||||||| |||||||||||||||    
T  38111531 tttgtaaacgtattaaataaatgtagaaaatattgt 38111496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 159 - 191
Target Start/End: Original strand, 23838260 - 23838292
Alignment:
Q  159 gcaacaggataggaatgaaataaaggcatgaaa 191  Q
    |||||| ||||||||||||||||||||||||||    
T  23838260 gcaacatgataggaatgaaataaaggcatgaaa 23838292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 85; Significance: 2e-40; HSPs: 40)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 25 - 149
Target Start/End: Original strand, 12441819 - 12441943
Alignment:
Q  25 gagagaaacatgtttagggcttggtatatataaccaagtttacatggaaattagggtggtcgaatttgcatgaaaattatggtattctgtttgtaaacgt 124  Q
    |||||||||| |||||||| |||| |||||||||||||||||||||||||||||||||  |||||||||||| |||||| | |||| |||||||||||||    
T  12441819 gagagaaacacgtttagggtttgggatatataaccaagtttacatggaaattagggtgtccgaatttgcatggaaattaggatattatgtttgtaaacgt 12441918  T
Q  125 attaaataagtgtagaaaatattgt 149  Q
    |||||||||||||| ||||||||||    
T  12441919 attaaataagtgtataaaatattgt 12441943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 29 - 149
Target Start/End: Complemental strand, 38110467 - 38110347
Alignment:
Q  29 gaaacatgtttagggcttggtatatataaccaagtttacatggaaattagggtggtcgaatttgcatgaaaattatggtattctgtttgtaaacgtatta 128  Q
    |||||| |||||||| ||||||||||||| ||||||||||||||||||||||| | ||| | ||||| ||||||||||||||||||||||||||||||||    
T  38110467 gaaacacgtttagggtttggtatatataatcaagtttacatggaaattagggtagccgagtctgcataaaaattatggtattctgtttgtaaacgtatta 38110368  T
Q  129 aataagtgtagaaaatattgt 149  Q
    |||| ||||||||||||||||    
T  38110367 aatatgtgtagaaaatattgt 38110347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 26 - 149
Target Start/End: Original strand, 9487532 - 9487654
Alignment:
Q  26 agagaaacatgtttagggcttggtatatataaccaagtttacatggaaattagggtggtcgaatttgcatgaaaattatggtattctgtttgtaaacgta 125  Q
    ||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| | ||| |||||||| |||||| || ||||||||||||||||||    
T  9487532 agagaaacacgtttagggcttgatatatataaccaagtttacatggaaattagggtagccgagtttgcatggaaattagggcattctgtttgtaaacgta 9487631  T
Q  126 ttaaataagtgtagaaaatattgt 149  Q
    |||||||||| |||||||||||||    
T  9487632 ttaaataagt-tagaaaatattgt 9487654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 25 - 149
Target Start/End: Complemental strand, 7128120 - 7127996
Alignment:
Q  25 gagagaaacatgtttagggcttggtatatataaccaagtttacatggaaattagggtggtcgaatttgcatgaaaattatggtattctgtttgtaaacgt 124  Q
    |||||||||| ||||||||||| ||||||||||| ||||||| |||||||||||||| | ||| |||||||  ||||||  |||||||||||||||||||    
T  7128120 gagagaaacacgtttagggcttcgtatatataacgaagtttatatggaaattagggtagccgagtttgcatagaaattagagtattctgtttgtaaacgt 7128021  T
Q  125 attaaataagtgtagaaaatattgt 149  Q
    |||||||||||||||||||||||||    
T  7128020 attaaataagtgtagaaaatattgt 7127996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 25 - 149
Target Start/End: Complemental strand, 16305990 - 16305866
Alignment:
Q  25 gagagaaacatgtttagggcttggtatatataaccaagtttacatggaaattagggtggtcgaatttgcatgaaaattatggtattctgtttgtaaacgt 124  Q
    |||||||||| ||||||| ||||||||||||||||||||| ||||||||||||||||   ||| |||||||| |||||| |||||||||||| |||||||    
T  16305990 gagagaaacacgtttaggacttggtatatataaccaagttcacatggaaattagggtaaccgagtttgcatggaaattaaggtattctgtttataaacgt 16305891  T
Q  125 attaaataagtgtagaaaatattgt 149  Q
    |||||||||||||| ||||||||||    
T  16305890 attaaataagtgtaaaaaatattgt 16305866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 49 - 192
Target Start/End: Original strand, 13104807 - 13104951
Alignment:
Q  49 tatatataaccaagtttacatggaaattagggtggtcgaatttgcatgaaaattatggtattctgtttgtaaacgtattaaataagtgtagaaaatattg 148  Q
    ||||||||||||||||||||||||||||||||| | |||||||||||| |||||| ||||||||||||||||| ||||||||||||| ||||||||||||    
T  13104807 tatatataaccaagtttacatggaaattagggtagccgaatttgcatggaaattagggtattctgtttgtaaaagtattaaataagtatagaaaatattg 13104906  T
Q  149 t-cnnnnnnnggcaacaggataggaatgaaataaaggcatgaaat 192  Q
    |         ||||||| ||||| |||||||||||||||||||||    
T  13104907 taaaaaaaaaggcaacatgatagaaatgaaataaaggcatgaaat 13104951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 47 - 198
Target Start/End: Original strand, 41092463 - 41092617
Alignment:
Q  47 ggtatatataaccaagtttacatggaaattagggtggtcgaatttgcatgaaaattatggtattctgtttgtaaacgtattaaataagtgtagaaaatat 146  Q
    ||||||||||||||||||||||| ||||||||||| ||||| |||||||| ||||||  | |||||||||||||||||||||||||||||||||||||||    
T  41092463 ggtatatataaccaagtttacatagaaattagggtagtcgagtttgcatggaaattagagcattctgtttgtaaacgtattaaataagtgtagaaaatat 41092562  T
Q  147 tgt---cnnnnnnnggcaacaggataggaatgaaataaaggcatgaaattggttc 198  Q
    |||           ||||||| |||||||||||||||||||||| ||||||||||    
T  41092563 tgtaaaaaaaaaaaggcaacatgataggaatgaaataaaggcataaaattggttc 41092617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 25 - 150
Target Start/End: Complemental strand, 41511569 - 41511445
Alignment:
Q  25 gagagaaacatgtttagggcttggtatatataaccaagtttacatggaaattagggtggtcgaatttgcatgaaaattatggtattctgtttgtaaacgt 124  Q
    |||||||||| ||||||||||||  ||||||||| |||||||||||||||||||||| | ||| |||||||| |||||| |||||||||||| |||| ||    
T  41511569 gagagaaacacgtttagggcttgacatatataacaaagtttacatggaaattagggtagccgagtttgcatggaaatta-ggtattctgtttttaaaagt 41511471  T
Q  125 attaaataagtgtagaaaatattgtc 150  Q
    ||||||||||||||||||||||||||    
T  41511470 attaaataagtgtagaaaatattgtc 41511445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 47 - 192
Target Start/End: Original strand, 13034832 - 13034977
Alignment:
Q  47 ggtatatataaccaagtttacatggaaattagggtggtcgaatttgcatgaaaattatggtattctgtttgtaaacgtattaaataagtgtagaaaatat 146  Q
    ||||||||||||||||||||||||||||||||||| | ||| |||||||||||||||  |||||||||||||||| ||||||||||||| ||||||||||    
T  13034832 ggtatatataaccaagtttacatggaaattagggtagccgactttgcatgaaaattagagtattctgtttgtaaa-gtattaaataagtatagaaaatat 13034930  T
Q  147 tgt-cnnnnnnnggcaacaggataggaatgaaataaaggcatgaaat 192  Q
    |||         ||||||| ||||| |||||||||||||||||||||    
T  13034931 tgtaaaaaaaaaggcaacatgatagaaatgaaataaaggcatgaaat 13034977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 37 - 143
Target Start/End: Complemental strand, 23141148 - 23141043
Alignment:
Q  37 tttagggcttggtatatataaccaagtttacatggaaattagggtggtcgaatttgcatgaaaattatggtattctgtttgtaaacgtattaaataagtg 136  Q
    ||||||||||||||||||||| |||||||||||||||||||| || | ||| |||||||| ||||||  |||||||||||||||||||||||||||| ||    
T  23141148 tttagggcttggtatatataatcaagtttacatggaaattagagtagccgagtttgcatggaaattagtgtattctgtttgtaaacgtattaaataa-tg 23141050  T
Q  137 tagaaaa 143  Q
    |||||||    
T  23141049 tagaaaa 23141043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 49 - 150
Target Start/End: Original strand, 38004236 - 38004337
Alignment:
Q  49 tatatataaccaagtttacatggaaattagggtggtcgaatttgcatgaaaattatggtattctgtttgtaaacgtattaaataagtgtagaaaatattg 148  Q
    |||||||||||||||||||||||||||||| || |  || |||||||| ||| || || |||||  ||||||||||||||||||||||||||||||||||    
T  38004236 tatatataaccaagtttacatggaaattagtgtagctgagtttgcatggaaagtagggcattctaattgtaaacgtattaaataagtgtagaaaatattg 38004335  T
Q  149 tc 150  Q
    ||    
T  38004336 tc 38004337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 25 - 135
Target Start/End: Complemental strand, 5398306 - 5398195
Alignment:
Q  25 gagagaaacatg-tttagggcttggtatatataaccaagtttacatggaaattagggtggtcgaatttgcatgaaaattatggtattctgtttgtaaacg 123  Q
    |||||||||||| ||||||| ||| ||||||||  | ||||| ||| ||||||||||| | ||| |||||||| |||||| |||||||||||||||||||    
T  5398306 gagagaaacatggtttagggtttgctatatatagtcgagtttgcatagaaattagggtagccgagtttgcatggaaattagggtattctgtttgtaaacg 5398207  T
Q  124 tattaaataagt 135  Q
    ||||||||||||    
T  5398206 tattaaataagt 5398195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 87 - 197
Target Start/End: Complemental strand, 19322618 - 19322507
Alignment:
Q  87 aatttgcatgaaaattatggtattctgtttgtaaacgtattaaataagtgtagaaaatatt-gtcnnnnnnnggcaacaggataggaatgaaataaaggc 185  Q
    ||||| |||| |||||| |||||||||||||||||||||||||||||||||||||||||||  |        ||||||| ||||||||||| |||||| |    
T  19322618 aatttacatggaaattagggtattctgtttgtaaacgtattaaataagtgtagaaaatattattaaaaaaaaggcaacatgataggaatgagataaagac 19322519  T
Q  186 atgaaattggtt 197  Q
    ||||||||||||    
T  19322518 atgaaattggtt 19322507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 26 - 138
Target Start/End: Complemental strand, 14854616 - 14854503
Alignment:
Q  26 agagaaacatg-tttagggcttggtatatataaccaagtttacatggaaattagggtggtcgaatttgcatgaaaattatggtattctgtttgtaaacgt 124  Q
    ||||||||||| |||| || ||| ||||||||  | ||||| |||| |||||||||| | ||| |||||||| |||||| |||||| |||||||||||||    
T  14854616 agagaaacatggtttacggtttgctatatatagtcgagtttgcatgaaaattagggtagccgagtttgcatggaaattaaggtattttgtttgtaaacgt 14854517  T
Q  125 attaaataagtgta 138  Q
    ||||||||||||||    
T  14854516 attaaataagtgta 14854503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 236 - 288
Target Start/End: Complemental strand, 24326520 - 24326468
Alignment:
Q  236 atgaaattagtgcgatgaatttttctggtattgtgtacaaaatattgtcaaaa 288  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  24326520 atgaaattagtgcgatgaatttttctagtattgtgtacaaaatattgtcaaaa 24326468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 236 - 288
Target Start/End: Original strand, 24350822 - 24350874
Alignment:
Q  236 atgaaattagtgcgatgaatttttctggtattgtgtacaaaatattgtcaaaa 288  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  24350822 atgaaattagtgcgatgaatttttctagtattgtgtacaaaatattgtcaaaa 24350874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 236 - 288
Target Start/End: Original strand, 24351375 - 24351427
Alignment:
Q  236 atgaaattagtgcgatgaatttttctggtattgtgtacaaaatattgtcaaaa 288  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  24351375 atgaaattagtgcgatgaatttttctagtattgtgtacaaaatattgtcaaaa 24351427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 36 - 138
Target Start/End: Complemental strand, 7779803 - 7779702
Alignment:
Q  36 gtttagggcttggtatatataaccaagtttacatggaaattagggtggtcgaatttgcatgaaaattatggtattctgtttgtaaacgtattaaataagt 135  Q
    |||||| | ||| |||||||| || ||||| |||| |||||||||| ||||| |||||||| |||||| ||||||||||||||||| ||||| |||||||    
T  7779803 gtttagagtttgttatatatatccgagtttgcatgaaaattagggtagtcgagtttgcatggaaattagggtattctgtttgtaaaagtatt-aataagt 7779705  T
Q  136 gta 138  Q
    |||    
T  7779704 gta 7779702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 236 - 286
Target Start/End: Complemental strand, 19122678 - 19122628
Alignment:
Q  236 atgaaattagtgcgatgaatttttctggtattgtgtacaaaatattgtcaa 286  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  19122678 atgaaattagtgcgatgaatttttctagtattgtgtacaaaatattgtcaa 19122628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 236 - 288
Target Start/End: Original strand, 12442034 - 12442086
Alignment:
Q  236 atgaaattagtgcgatgaatttttctggtattgtgtacaaaatattgtcaaaa 288  Q
    |||||||||||||||||||||||| | ||||||||||||||||||||||||||    
T  12442034 atgaaattagtgcgatgaatttttttagtattgtgtacaaaatattgtcaaaa 12442086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 236 - 288
Target Start/End: Complemental strand, 19322493 - 19322441
Alignment:
Q  236 atgaaattagtgcgatgaatttttctggtattgtgtacaaaatattgtcaaaa 288  Q
    |||||||||||||||||||||||| | ||||||||||||||||||||||||||    
T  19322493 atgaaattagtgcgatgaatttttttagtattgtgtacaaaatattgtcaaaa 19322441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 236 - 281
Target Start/End: Complemental strand, 23140916 - 23140871
Alignment:
Q  236 atgaaattagtgcgatgaatttttctggtattgtgtacaaaatatt 281  Q
    |||||||||||||||||||||||||| |||||||||||||||||||    
T  23140916 atgaaattagtgcgatgaatttttctagtattgtgtacaaaatatt 23140871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 236 - 288
Target Start/End: Complemental strand, 16305774 - 16305722
Alignment:
Q  236 atgaaattagtgcgatgaatttttctggtattgtgtacaaaatattgtcaaaa 288  Q
    ||||||||||||| |||||||||||| |||||||||| |||||||||||||||    
T  16305774 atgaaattagtgcaatgaatttttctagtattgtgtataaaatattgtcaaaa 16305722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 89 - 149
Target Start/End: Complemental strand, 19122753 - 19122694
Alignment:
Q  89 tttgcatgaaaattatggtattctgtttgtaaacgtattaaataagtgtagaaaatattgt 149  Q
    |||||||| |||||| |||||| ||||||||| ||||||||||||||||||||||||||||    
T  19122753 tttgcatggaaattagggtattttgtttgtaa-cgtattaaataagtgtagaaaatattgt 19122694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 25 - 81
Target Start/End: Complemental strand, 19322654 - 19322598
Alignment:
Q  25 gagagaaacatgtttagggcttggtatatataaccaagtttacatggaaattagggt 81  Q
    |||||||||| |||| | ||||||||||||||||||| |||||||||||||||||||    
T  19322654 gagagaaacacgtttcgagcttggtatatataaccaaatttacatggaaattagggt 19322598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 36 - 81
Target Start/End: Original strand, 31486598 - 31486643
Alignment:
Q  36 gtttagggcttggtatatataaccaagtttacatggaaattagggt 81  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||    
T  31486598 gtttagggcttggtatatatcgccaagtttacatggaaattagggt 31486643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 236 - 288
Target Start/End: Original strand, 14165855 - 14165907
Alignment:
Q  236 atgaaattagtgcgatgaatttttctggtattgtgtacaaaatattgtcaaaa 288  Q
    ||||||||| ||| |||||||||||| ||||||||||||||||| ||||||||    
T  14165855 atgaaattaatgcaatgaatttttctagtattgtgtacaaaatactgtcaaaa 14165907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 158 - 198
Target Start/End: Complemental strand, 23140998 - 23140958
Alignment:
Q  158 ggcaacaggataggaatgaaataaaggcatgaaattggttc 198  Q
    ||||||| |||||||||||||||||||||||||||||||||    
T  23140998 ggcaacaagataggaatgaaataaaggcatgaaattggttc 23140958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 114 - 150
Target Start/End: Original strand, 31487001 - 31487037
Alignment:
Q  114 tttgtaaacgtattaaataagtgtagaaaatattgtc 150  Q
    |||||||||||||||||||||||||||||||||||||    
T  31487001 tttgtaaacgtattaaataagtgtagaaaatattgtc 31487037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 198
Target Start/End: Complemental strand, 7127974 - 7127940
Alignment:
Q  164 aggataggaatgaaataaaggcatgaaattggttc 198  Q
    |||||||||||||||||||||||||||||||||||    
T  7127974 aggataggaatgaaataaaggcatgaaattggttc 7127940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 238 - 288
Target Start/End: Original strand, 9487720 - 9487770
Alignment:
Q  238 gaaattagtgcgatgaatttttctggtattgtgtacaaaatattgtcaaaa 288  Q
    ||||||||||| ||||| |||| | ||||||||||||||||||||||||||    
T  9487720 gaaattagtgcaatgaaattttatagtattgtgtacaaaatattgtcaaaa 9487770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 81
Target Start/End: Original strand, 26522909 - 26522943
Alignment:
Q  47 ggtatatataaccaagtttacatggaaattagggt 81  Q
    |||||||||||||||||||||||||||||||||||    
T  26522909 ggtatatataaccaagtttacatggaaattagggt 26522943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 81
Target Start/End: Original strand, 43394761 - 43394795
Alignment:
Q  47 ggtatatataaccaagtttacatggaaattagggt 81  Q
    |||||||||||||||||||||||||||||||||||    
T  43394761 ggtatatataaccaagtttacatggaaattagggt 43394795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 113 - 150
Target Start/End: Original strand, 31486642 - 31486679
Alignment:
Q  113 gtttgtaaacgtattaaataagtgtagaaaatattgtc 150  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  31486642 gtttgtaaatgtattaaataagtgtagaaaatattgtc 31486679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 166 - 197
Target Start/End: Original strand, 12441966 - 12441997
Alignment:
Q  166 gataggaatgaaataaaggcatgaaattggtt 197  Q
    ||||||||||||||||||||||||||||||||    
T  12441966 gataggaatgaaataaaggcatgaaattggtt 12441997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 158 - 197
Target Start/End: Original strand, 14165776 - 14165815
Alignment:
Q  158 ggcaacaggataggaatgaaataaaggcatgaaattggtt 197  Q
    ||||||| |||||||||||||||||| |||||||||||||    
T  14165776 ggcaacatgataggaatgaaataaagacatgaaattggtt 14165815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 198
Target Start/End: Complemental strand, 16305850 - 16305812
Alignment:
Q  160 caacaggataggaatgaaataaaggcatgaaattggttc 198  Q
    ||||| ||||||||||||||||||| |||||||||||||    
T  16305850 caacatgataggaatgaaataaaggtatgaaattggttc 16305812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 81
Target Start/End: Complemental strand, 35159995 - 35159961
Alignment:
Q  47 ggtatatataaccaagtttacatggaaattagggt 81  Q
    ||||| |||||||||||||||||||||||||||||    
T  35159995 ggtatttataaccaagtttacatggaaattagggt 35159961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 277
Target Start/End: Complemental strand, 38110242 - 38110201
Alignment:
Q  236 atgaaattagtgcgatgaatttttctggtattgtgtacaaaa 277  Q
    |||||||||||| ||||||||||||| |||| ||||||||||    
T  38110242 atgaaattagtgggatgaatttttctagtatcgtgtacaaaa 38110201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 198
Target Start/End: Complemental strand, 38110315 - 38110282
Alignment:
Q  165 ggataggaatgaaataaaggcatgaaattggttc 198  Q
    ||||||||||||||||||| ||||||||||||||    
T  38110315 ggataggaatgaaataaagacatgaaattggttc 38110282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 49; Significance: 6e-19; HSPs: 2)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 89 - 145
Target Start/End: Complemental strand, 102996 - 102940
Alignment:
Q  89 tttgcatgaaaattatggtattctgtttgtaaacgtattaaataagtgtagaaaata 145  Q
    ||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||    
T  102996 tttgcatgaaaattagggtattctgtttgtaaacgtattaaatacgtgtagaaaata 102940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 158 - 198
Target Start/End: Complemental strand, 102922 - 102882
Alignment:
Q  158 ggcaacaggataggaatgaaataaaggcatgaaattggttc 198  Q
    ||||||| ||||| ||||||||||||| |||||||||||||    
T  102922 ggcaacatgatagaaatgaaataaaggtatgaaattggttc 102882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 236 - 281
Target Start/End: Original strand, 196579 - 196624
Alignment:
Q  236 atgaaattagtgcgatgaatttttctggtattgtgtacaaaatatt 281  Q
    |||||||||||||||||||||||||| |||||||||||||||||||    
T  196579 atgaaattagtgcgatgaatttttctagtattgtgtacaaaatatt 196624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 93 - 143
Target Start/End: Original strand, 196283 - 196333
Alignment:
Q  93 catgaaaattatggtattctgtttgtaaacgtattaaataagtgtagaaaa 143  Q
    ||||||||||| |||||| ||||||||||||||||||||||||||| ||||    
T  196283 catgaaaattagggtattatgtttgtaaacgtattaaataagtgtacaaaa 196333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 89 - 138
Target Start/End: Original strand, 12282 - 12331
Alignment:
Q  89 tttgcatgaaaattatggtattctgtttgtaaacgtattaaataagtgta 138  Q
    |||||||| |||||| |||||| |||||||||||||||||||||||||||    
T  12282 tttgcatggaaattagggtattatgtttgtaaacgtattaaataagtgta 12331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 45 - 81
Target Start/End: Original strand, 12344 - 12380
Alignment:
Q  45 ttggtatatataaccaagtttacatggaaattagggt 81  Q
    |||||||||||||||||||||||||||||||||||||    
T  12344 ttggtatatataaccaagtttacatggaaattagggt 12380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0240 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 81
Target Start/End: Complemental strand, 13551 - 13517
Alignment:
Q  47 ggtatatataaccaagtttacatggaaattagggt 81  Q
    |||||||||||||||||||| ||||||||||||||    
T  13551 ggtatatataaccaagtttagatggaaattagggt 13517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University