View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19687_low_35 (Length: 330)
Name: NF19687_low_35
Description: NF19687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19687_low_35 |
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Alignment Details
Target: chr5 (Bit Score: 162; Significance: 2e-86; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 1 - 162
Target Start/End: Original strand, 27562025 - 27562186
Alignment:
| Q |
1 |
ctcgggaagtgtgtacatattatcatcatttagttcattctggaaataaacatacatgaaaagatacttttacatggaaccctagagtaaatgcatctca |
100 |
Q |
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| T |
27562025 |
ctcgggaagtgtgtacatattatcatcatttagttcattctggaaataaacatacatgaaaagatacttttacatggaaccctagagtaaatgcatctca |
27562124 |
T |
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| Q |
101 |
tttactcaagaaataatgacaaaatcattgcagatagctcaaatttacaaacctgaagttct |
162 |
Q |
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| T |
27562125 |
tttactcaagaaataatgacaaaatcattgcagatagctcaaatttacaaacctgaagttct |
27562186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 161 - 321
Target Start/End: Original strand, 27562234 - 27562394
Alignment:
| Q |
161 |
ctcagaaagacgatcagcattcactatctatgacatcagcgaagcatatatctcatacagaatcgacaaatgaatgacagaaggaaagaaatcgcaaaaa |
260 |
Q |
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| T |
27562234 |
ctcagaaagacgatcagaattcactatctatgacatcagccaagcatatatctcagacagaatcgacaaatgaatgacagaaggaaagaaatcgcaaaaa |
27562333 |
T |
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| Q |
261 |
acaaaaccctggcttcctcaattgaattcttcaacacagacaaacccatggctctctctgc |
321 |
Q |
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| T |
27562334 |
ataaaaccttggcttcctcaattgaattcttcaacacagacaaaaccatggctctctctgc |
27562394 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 36669080 - 36669239
Alignment:
| Q |
1 |
ctcgggaagtgtgtacata-ttatcatcatttagttcattctggaaataaacatacatgaaaagatacttttacatggaaccctagagtaaatgcatctc |
99 |
Q |
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| T |
36669080 |
ctcgggaagtgcgtacatacttatcatcatttagttcattctggaa-taaacatacatgaaaagatacttttagatggaaccct-gagtcaatgcatctc |
36669177 |
T |
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| Q |
100 |
atttactcaagaaataatgacaaaatcattgcagatagctcaaatttacaaacctgaagttc |
161 |
Q |
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| T |
36669178 |
aattactgaagaaataatgacaaaaccattgcagatagttcaaatttacaaacctgaagttc |
36669239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 161 - 321
Target Start/End: Original strand, 36669288 - 36669449
Alignment:
| Q |
161 |
ctcagaaagacgatcagcattcactatctatgacatcagcgaagcatatatctcatac--agaatcgacaaatgaatgacagaaggaaagaaatcgcaaa |
258 |
Q |
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||||||||||||||||||||||||||||||||| |||||| ||||||| |||| | || ||||||||||||||||||||||||||||||||||| | || |
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| T |
36669288 |
ctcagaaagacgatcagcattcactatctatgatatcagccaagcataaatcttagacagagaatcgacaaatgaatgacagaaggaaagaaatcac-aa |
36669386 |
T |
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| Q |
259 |
aaacaaaaccctggcttcctcaattgaattcttcaacacagacaaacccatggctctctctgc |
321 |
Q |
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| T |
36669387 |
aaataaaaccttcacttcctcaattgaattcttcaactcagacaaacccatagctctctctgc |
36669449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 84; Significance: 7e-40; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 165 - 321
Target Start/End: Original strand, 26928772 - 26928930
Alignment:
| Q |
165 |
gaaagacgatcagcattcactatctatgacatcagcgaagcatatatctcatacaga--atcgacaaatgaatgacagaaggaaagaaatcgcaaaaaac |
262 |
Q |
| |
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|||||||||||| |||||||||||| |||||||||| |||||||||||| | ||||| |||||||||||||||| ||||||||||||||| ||||||| |
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| T |
26928772 |
gaaagacgatcatcattcactatctgtgacatcagccaagcatatatcttagacagagaatcgacaaatgaatgagagaaggaaagaaatcacaaaaaat |
26928871 |
T |
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| Q |
263 |
aaaaccctggcttcctcaattgaattcttcaacacagacaaacccatggctctctctgc |
321 |
Q |
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|||||| ||||||||||||||||||| ||||| | |||||| |||||||||||||| |
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| T |
26928872 |
aaaaccttggcttcctcaattgaatttttcaagtcggacaaagtaatggctctctctgc |
26928930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 47 - 129
Target Start/End: Original strand, 26928621 - 26928703
Alignment:
| Q |
47 |
taaacatacatgaaaagatacttttacatggaaccctagagtaaatgcatctcatttactcaagaaataatgacaaaatcatt |
129 |
Q |
| |
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|||||| |||| |||| |||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||| |||| |
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| T |
26928621 |
taaacacacataaaaatatacttttacatggaaccctagagtatatgcatctaaattactcaagaaataatgacaaaaccatt |
26928703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 162
Target Start/End: Original strand, 29411567 - 29411725
Alignment:
| Q |
1 |
ctcgggaagtgtgtacata-ttatcatcatttagttcattctggaaataaacatacatgaaaagatacttttacatggaaccctagagtaaatgcatctc |
99 |
Q |
| |
|
|||||||| || ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | | |||| | || |
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| T |
29411567 |
ctcgggaattgcgtacatacttatcatcatttagttcattctggaaataaacac----gaaaagatacttttacatggaaccctataatgaatgtgtttc |
29411662 |
T |
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| Q |
100 |
atttactcaagaaataatgacaaaatcattgcagatagctcaaatttacaaacctgaagttct |
162 |
Q |
| |
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| |||||||||||||||||| || | |||||||||||||||||||| |||||||||||||||| |
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| T |
29411663 |
aattactcaagaaataatgataacaccattgcagatagctcaaattgacaaacctgaagttct |
29411725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 161 - 321
Target Start/End: Original strand, 29411773 - 29411938
Alignment:
| Q |
161 |
ctcagaaagacgatcagcattcactatctatgacatcagcgaagcatatatctcatac--agaatcgac--aaatgaatgacagaaggaaag-aaatcgc |
255 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||| || |||| |||| | || ||||||||| ||||||||| ||||||||| ||||| | |
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| T |
29411773 |
ctcagaaagacgatcagcattcacgatctatgacatcagccaaacatacatcttagacaaagaatcgacaaaaatgaatggtggaaggaaagaaaatcac |
29411872 |
T |
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| Q |
256 |
aaaaaacaaaaccctggcttcctcaattgaattcttcaacacagacaaacccatggctctctctgc |
321 |
Q |
| |
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||||| ||||| |||||||||||||||| | ||||||| | |||||||||||||| || ||||| |
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| T |
29411873 |
aaaaagttaaaccttggcttcctcaattgagtgcttcaactcggacaaacccatggccctatctgc |
29411938 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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