View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19687_low_36 (Length: 324)
Name: NF19687_low_36
Description: NF19687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19687_low_36 |
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Alignment Details
Target: chr1 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 13 - 306
Target Start/End: Original strand, 3530636 - 3530929
Alignment:
| Q |
13 |
aatatcaaatggaatggaatgatactatgaatttggttacatcaactttgtggttaaatttcttgaagaaaatggaacatgatgcatatacaacacaaga |
112 |
Q |
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| T |
3530636 |
aatatcaaatggaatggaatgatactatgaatttggttacatcaactttgtggttaaatttcttgaagaaaatggaacatgatgcatatacaacacaaga |
3530735 |
T |
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| Q |
113 |
ggatgatgcatgtcatgtctttgaatcatggaatttccaacttggttgaatagacaagaagaaatctgtttagaacagtggtcacatgatcacttcatat |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3530736 |
ggatgatgcatgtcatgtctttgaatcatggaatttccaacttggttgaatagacaagaagaaatctgtttagaacagtggtcacatgatcacttcatat |
3530835 |
T |
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| Q |
213 |
atctcaacttaccttggtaagttcaacaaaaatttcataacttttgaaaatgaaattttgtttaaaaaagttctttttggctgtacttttgtac |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| |
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| T |
3530836 |
atctcaacttaccttggtaagttcaacaaaaatttcataacttttgaaaatgaaattttatttaaaaaagttctttttggttgtacttttgtac |
3530929 |
T |
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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 13 - 56
Target Start/End: Complemental strand, 48681484 - 48681441
Alignment:
| Q |
13 |
aatatcaaatggaatggaatgatactatgaatttggttacatca |
56 |
Q |
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|||||||||||||||||||||| |||||||||||||||| |||| |
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| T |
48681484 |
aatatcaaatggaatggaatgacactatgaatttggttaaatca |
48681441 |
T |
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