View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19687_low_38 (Length: 322)
Name: NF19687_low_38
Description: NF19687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19687_low_38 |
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Alignment Details
Target: chr6 (Bit Score: 257; Significance: 1e-143; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 2 - 304
Target Start/End: Original strand, 32601354 - 32601653
Alignment:
| Q |
2 |
atttgaagaaaataaattaaatacctttctctaacacttataccattattttcacaattatcatacttcaaatagtcgactccctaaagaaaaatttgaa |
101 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32601354 |
atttgaagaaaataaattaaatacctttctctaacgcttataccattattttcacaattatcatacttcaaatagtcgactccctaaagaaaaatttgaa |
32601453 |
T |
|
| Q |
102 |
ccaatattagttaacaacataagattataaataggatataataatgttgataaaagtgaaaaatgattttcaaataatgtatgtatatatggtttaccca |
201 |
Q |
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|||||||| |||||||||||||| ||| |||||| |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32601454 |
ccaatattggttaacaacataaggttagaaatagaatataa---tgttgataaaattgaaaaatgattttcaaataatgtatgtatatatggtttaccca |
32601550 |
T |
|
| Q |
202 |
agaagcaaatgttttggcatcttgtatttcatgtcccaatgatccaggcatacgtttactacaagtttgatttctgcatagcaattgtaagtgatcataa |
301 |
Q |
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|||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32601551 |
agaagcaaatgttttggcatcttgtatttcatgtcctagtgatccaggcatacgtttactacaagtttgatttctgcatagcaattgtaagtgatcataa |
32601650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 304
Target Start/End: Original strand, 32590884 - 32591184
Alignment:
| Q |
1 |
catttgaagaaaataaattaaatacctttctctaacacttataccattattttcacaattatcatacttcaaatagtcgactccctaaagaaaaatttga |
100 |
Q |
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||||||||||| |||||||||||||||||||||||| |||||||||||||| | |||||||||||||||||||||||||||||||||||||||| ||| | |
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| T |
32590884 |
catttgaagaacataaattaaatacctttctctaacgcttataccattattgtgacaattatcatacttcaaatagtcgactccctaaagaaaattttaa |
32590983 |
T |
|
| Q |
101 |
accaatattagttaacaacataagattataaataggatataataatgttgataaaagtgaaaaatgattttcaaataatgtatgtatatatggtttaccc |
200 |
Q |
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| || |||| |||||||||||||||||||||| | ||||||| |||||||||||||||||||||| ||||||||||||||||||||| || | ||||| |
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| T |
32590984 |
atcagtattggttaacaacataagattataaacaagatataa---tgttgataaaagtgaaaaatgactttcaaataatgtatgtatatgtgatataccc |
32591080 |
T |
|
| Q |
201 |
aagaagcaaatgttttggcatcttgtatttcatgtcccaatgatccaggcatacgtttactacaagtttgatttctgcatagcaattgtaagtgatcata |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32591081 |
aagaagcaaatgttttggcatcttgtatttcatgtcccaatgatccaggcatacgtttactacaagtttgatttctgcatagcaattgtaagtgatcata |
32591180 |
T |
|
| Q |
301 |
aata |
304 |
Q |
| |
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|||| |
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| T |
32591181 |
aata |
32591184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 195 - 289
Target Start/End: Complemental strand, 24883059 - 24882965
Alignment:
| Q |
195 |
ttacccaagaagcaaatgttttggcatcttgtatttcatgtcccaatgatccaggcatacgtttactacaagtttgatttctgcatagcaattgt |
289 |
Q |
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||||||| |||||||||||||| ||||||||| |||||| || |||||||| ||||| | |||||| || |||||||||||||| || |||||| |
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| T |
24883059 |
ttacccatgaagcaaatgtttttgcatcttgttcttcatgccctaatgatcctggcattcttttactgcatgtttgatttctgcagagaaattgt |
24882965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 90
Target Start/End: Complemental strand, 24883168 - 24883123
Alignment:
| Q |
45 |
cattattttcacaattatcatacttcaaatagtcgactccctaaag |
90 |
Q |
| |
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||||||| |||||||||||||||||||| ||||| | ||||||||| |
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| T |
24883168 |
cattattctcacaattatcatacttcaagtagtcaattccctaaag |
24883123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 122; Significance: 1e-62; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 17 - 290
Target Start/End: Original strand, 35124405 - 35124672
Alignment:
| Q |
17 |
attaaatacctttctctaacacttataccattattttcacaattatcatacttcaaatagtcgactccctaaagaaaaatttgaaccaatattagttaac |
116 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || | | || |||||| |
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| T |
35124405 |
attaaatacctttctctaacgcttataccattattttcacaattatcatacttcaaatagtcgactccctaaagaaaattttaaattagtgttggttaac |
35124504 |
T |
|
| Q |
117 |
aacataagattataaataggatataataatgttgataaaagtgaaaaatgattttcaaataatgtatgtatatatggtttacccaagaagcaaatgtttt |
216 |
Q |
| |
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||| || ||||| | ||| ||||| ||| || || |||||| || |||||| ||||| ||||||||||| | ||||||||||||||||||||| |
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| T |
35124505 |
aacttataattat-----gcataatataattttggtagaaatgaaaattggctttcaa-taatgaatgtatatatgatatacccaagaagcaaatgtttt |
35124598 |
T |
|
| Q |
217 |
ggcatcttgtatttcatgtcccaatgatccaggcatacgtttactacaagtttgatttctgcatagcaattgta |
290 |
Q |
| |
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||||||||||||||||||||| | |||||||||||| ||||||||||||||| ||||||| |||| ||||||| |
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| T |
35124599 |
ggcatcttgtatttcatgtcctagtgatccaggcatgcgtttactacaagttagatttctacataaaaattgta |
35124672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 17 - 305
Target Start/End: Original strand, 34578715 - 34578999
Alignment:
| Q |
17 |
attaaatacctttctctaacacttataccattattttcacaattatcatacttcaaatagtcgactccctaaagaaaaatttgaaccaatattagttaac |
116 |
Q |
| |
|
|||||||||||||| | ||| ||||| || |||||||||||||||||||||||||||||||| |||||||||| |||||||| || ||||| | |||||| |
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| T |
34578715 |
attaaatacctttcgcgaacgcttattccgttattttcacaattatcatacttcaaatagtcaactccctaaacaaaaatttaaatcaatactggttaac |
34578814 |
T |
|
| Q |
117 |
aacataagattataaataggatataataatgttgataaaagtgaaaaatgattttcaaataatgtatgtatatatggtttacccaagaagcaaatgtttt |
216 |
Q |
| |
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||| || ||| ||| ||| | |||||| ||||||| | | ||| | | ||| | ||||||||| |||| | | ||||||||||||||||||||| |
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| T |
34578815 |
aacctaggat-atatatatggtataat---gttgatagatatacaaatttacttttgagtaatgtatgcatattttatatacccaagaagcaaatgtttt |
34578910 |
T |
|
| Q |
217 |
ggcatcttgtatttcatgtcccaatgatccaggcatacgtttactacaagtttgatttctgcatagcaattgtaagtgatcataaatat |
305 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |||||| |
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| T |
34578911 |
ggcatcttgtatttcatgtcccagtgatccaggcatacgtttactacaagttagatttctgcataaaaattgtaagtgatcaaaaatat |
34578999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 169 - 298
Target Start/End: Original strand, 34594602 - 34594733
Alignment:
| Q |
169 |
tttcaaataatgta-tgtatatatggtt-tacccaagaagcaaatgttttggcatcttgtatttcatgtcccaatgatccaggcatacgtttactacaag |
266 |
Q |
| |
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|||||||||||||| ||||||||| | ||||||||||||||||||||| ||||||||| ||||||||||| |||||||||||| ||||||||||||| |
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| T |
34594602 |
tttcaaataatgtaatgtatatattataatacccaagaagcaaatgttttagcatcttgttcttcatgtcccagtgatccaggcatgcgtttactacaag |
34594701 |
T |
|
| Q |
267 |
tttgatttctgcatagcaattgtaagtgatca |
298 |
Q |
| |
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| || ||||||||| ||||| ||||||||| |
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| T |
34594702 |
taagagttctgcataaaaattgcaagtgatca |
34594733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 17 - 98
Target Start/End: Original strand, 34594423 - 34594504
Alignment:
| Q |
17 |
attaaatacctttctctaacacttataccattattttcacaattatcatacttcaaatagtcgactccctaaagaaaaattt |
98 |
Q |
| |
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||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||| |
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| T |
34594423 |
attaaatacctttctttagggcttataccattgttttcacaattatcatacttcaaatagtcaattccctaaagaaaaattt |
34594504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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