View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19687_low_43 (Length: 284)
Name: NF19687_low_43
Description: NF19687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19687_low_43 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 238; Significance: 1e-132; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 11 - 269
Target Start/End: Complemental strand, 2294688 - 2294434
Alignment:
| Q |
11 |
cacagatgtttagggaggaaacataatctataaccgccaagaccaaacagattaacaaaataaaccaacttcaatattactacaacaaagatcatatatt |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2294688 |
cacagatgtttagggaggaaacataatctataaccgccaagaccaaacagattaacaaaataaaccaacttcaatattactacaacaaagatcatatatt |
2294589 |
T |
|
| Q |
111 |
tttacaatgaaagtatcttgacttacaagaatgacaggcaaagtttttatttatacaggaaacaagatatataagaaagaacaataacatatgtgaaggc |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2294588 |
tttacaatgaaagtatcttgacttacaagaatgacaggcaaagtttttatttatacaggaaacaagatatataagaaagaacaataacatatgtgaaggc |
2294489 |
T |
|
| Q |
211 |
atatatatgtatgcataagggatcattatatgaaacaaaatcccaccatatgacaaatc |
269 |
Q |
| |
|
||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2294488 |
atata----tatgcataacggatcattatatgaaacaaaatcccaccatatgacaaatc |
2294434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 66 - 269
Target Start/End: Complemental strand, 2321932 - 2321746
Alignment:
| Q |
66 |
caaaataaaccaacttcaatattactacaacaaagatcatatatttt-tacaatgaaagtatcttgacttacaagaatgacaggcaaagtttttatttat |
164 |
Q |
| |
|
||||||||| |||||| ||||||| | ||||| |||||||| |||| |||| |||||||||||||||||||||||||||||| | | ||||| ||||| |
|
|
| T |
2321932 |
caaaataaaacaactttgatattacaaaaacaa-gatcatattttttatacattgaaagtatcttgacttacaagaatgacagac-atgttttattttat |
2321835 |
T |
|
| Q |
165 |
acaggaaacaagatatataagaaagaacaataacatatgtgaaggcatatatatgtatgcataagggatcattatatgaaacaaaatcccaccatatgac |
264 |
Q |
| |
|
||| ||||||||||||||||||| || ||||||||| ||||||||||||||||||||| ||||||||||||||| ||||||||| |
|
|
| T |
2321834 |
acaagaaacaagatatataagaa---------------gt-aaggcatatgaatgtatgcataagggatcattgtatgaaacaaaatccgaccatatgag |
2321751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 43 - 81
Target Start/End: Complemental strand, 2322009 - 2321971
Alignment:
| Q |
43 |
accgccaagaccaaacagattaacaaaataaaccaactt |
81 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
2322009 |
accgtcaagaccaaacagattaacaaaataaaccaactt |
2321971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 271
Target Start/End: Complemental strand, 2331388 - 2331332
Alignment:
| Q |
215 |
atatgtatgcataagggatcattatatgaaacaaaatcccaccatatgacaaatctg |
271 |
Q |
| |
|
||||||||||||||| ||||||| ||||||||||||| |||||| |||||||||| |
|
|
| T |
2331388 |
atatgtatgcataagtgatcatttgatgaaacaaaatcacaccatcggacaaatctg |
2331332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 11 - 42
Target Start/End: Complemental strand, 2322107 - 2322076
Alignment:
| Q |
11 |
cacagatgtttagggaggaaacataatctata |
42 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
2322107 |
cacagatgtttagggaggaaacataatctata |
2322076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University