View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19687_low_45 (Length: 265)

Name: NF19687_low_45
Description: NF19687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19687_low_45
NF19687_low_45
[»] chr7 (5 HSPs)
chr7 (79-249)||(38128096-38128261)
chr7 (23-78)||(9416725-9416780)
chr7 (41-84)||(35543184-35543227)
chr7 (41-84)||(38130000-38130043)
chr7 (23-81)||(40034396-40034454)
[»] chr5 (4 HSPs)
chr5 (20-84)||(6531233-6531297)
chr5 (20-84)||(9833277-9833341)
chr5 (20-84)||(9833815-9833879)
chr5 (56-84)||(6532987-6533015)
[»] chr3 (2 HSPs)
chr3 (23-84)||(25707228-25707289)
chr3 (54-84)||(20406494-20406524)
[»] chr6 (1 HSPs)
chr6 (41-84)||(21540522-21540565)
[»] chr4 (1 HSPs)
chr4 (23-78)||(23187673-23187728)


Alignment Details
Target: chr7 (Bit Score: 139; Significance: 8e-73; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 79 - 249
Target Start/End: Complemental strand, 38128261 - 38128096
Alignment:
Q  79 gaaaaagttgtagaaaaacccataaaaaataactagtaaatatatcttgtgaaagattgtctaaatgtgagctaaaattgacaaaaactataagtgcgaa 178  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  38128261 gaaaaagttgtagaaaaatccataaaaaataactagtaaatatatcttgtgaaagattgtctaaatgtgagctaaaattgacaaaaactataagtgtgaa 38128162  T
Q  179 attatgttagatatatatttaaagaacttcttttctcgtctcataacttttaaaactgttccggtctaaac 249  Q
    ||||||||||| ||||||||||||||     ||||||||||||||||||||||||||||||||||||||||    
T  38128161 attatgttagacatatatttaaagaa-----tttctcgtctcataacttttaaaactgttccggtctaaac 38128096  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 78
Target Start/End: Complemental strand, 9416780 - 9416725
Alignment:
Q  23 gatagagaaaattaccacttttcaagaaagtgataattaatatgatagtttttgtt 78  Q
    ||||| |||||||| || |||||||||||  |||||||||||||||||||||||||    
T  9416780 gatagtgaaaattatcatttttcaagaaaaggataattaatatgatagtttttgtt 9416725  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 41 - 84
Target Start/End: Original strand, 35543184 - 35543227
Alignment:
Q  41 ttttcaagaaagtgataattaatatgatagtttttgttgaaaaa 84  Q
    |||||||||||  |||||||||||||||| ||||||||||||||    
T  35543184 ttttcaagaaaaggataattaatatgataatttttgttgaaaaa 35543227  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 41 - 84
Target Start/End: Original strand, 38130000 - 38130043
Alignment:
Q  41 ttttcaagaaagtgataattaatatgatagtttttgttgaaaaa 84  Q
    ||||||||||| | ||||||||||||||||| ||||||||||||    
T  38130000 ttttcaagaaaataataattaatatgatagtctttgttgaaaaa 38130043  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 81
Target Start/End: Original strand, 40034396 - 40034454
Alignment:
Q  23 gatagagaaaattaccacttttcaagaaagtgataattaatatgatagtttttgttgaa 81  Q
    ||||||||||||||  | |||||||||||  ||||||||||||||| |||| |||||||    
T  40034396 gatagagaaaattattatttttcaagaaaaggataattaatatgattgtttatgttgaa 40034454  T

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Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 20 - 84
Target Start/End: Complemental strand, 6531297 - 6531233
Alignment:
Q  20 tatgatagagaaaattaccacttttcaagaaagtgataattaatatgatagtttttgttgaaaaa 84  Q
    |||||||||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||||||    
T  6531297 tatgatagagaaaattaccatttttcaaaaaaatgataattaatatgatagtttttgttgaaaaa 6531233  T

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Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 84
Target Start/End: Complemental strand, 9833341 - 9833277
Alignment:
Q  20 tatgatagagaaaattaccacttttcaagaaagtgataattaatatgatagtttttgttgaaaaa 84  Q
    ||||||||||||||||| || |||||||||||  | |||||||||||||||||||||||||||||    
T  9833341 tatgatagagaaaattatcatttttcaagaaaaagctaattaatatgatagtttttgttgaaaaa 9833277  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 84
Target Start/End: Original strand, 9833815 - 9833879
Alignment:
Q  20 tatgatagagaaaattaccacttttcaagaaagtgataattaatatgatagtttttgttgaaaaa 84  Q
    |||||||||||||| ||  | |||| ||||||  |||||||||||||||| ||||||||||||||    
T  9833815 tatgatagagaaaactataattttttaagaaaaggataattaatatgataatttttgttgaaaaa 9833879  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 56 - 84
Target Start/End: Original strand, 6532987 - 6533015
Alignment:
Q  56 taattaatatgatagtttttgttgaaaaa 84  Q
    |||||||||||||||||||||||||||||    
T  6532987 taattaatatgatagtttttgttgaaaaa 6533015  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 23 - 84
Target Start/End: Original strand, 25707228 - 25707289
Alignment:
Q  23 gatagagaaaattaccacttttcaagaaagtgataattaatatgatagtttttgttgaaaaa 84  Q
    |||||||| |||||||| ||||||||||| ||||||||||||| |||||||||||| |||||    
T  25707228 gatagagagaattaccatttttcaagaaaatgataattaatataatagtttttgttaaaaaa 25707289  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 84
Target Start/End: Original strand, 20406494 - 20406524
Alignment:
Q  54 gataattaatatgatagtttttgttgaaaaa 84  Q
    |||||||||||||||||||||||||||||||    
T  20406494 gataattaatatgatagtttttgttgaaaaa 20406524  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 84
Target Start/End: Original strand, 21540522 - 21540565
Alignment:
Q  41 ttttcaagaaagtgataattaatatgatagtttttgttgaaaaa 84  Q
    ||||||||||| ||||||||||| ||||||||||||||||||||    
T  21540522 ttttcaagaaaatgataattaatttgatagtttttgttgaaaaa 21540565  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 78
Target Start/End: Original strand, 23187673 - 23187728
Alignment:
Q  23 gatagagaaaattaccacttttcaagaaagtgataattaatatgatagtttttgtt 78  Q
    |||||||||||||| || |||||||||||  ||||||||||||||| |||||||||    
T  23187673 gatagagaaaattatcatttttcaagaaaaggataattaatatgattgtttttgtt 23187728  T

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