View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19687_low_5 (Length: 621)
Name: NF19687_low_5
Description: NF19687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19687_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 586; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 586; E-Value: 0
Query Start/End: Original strand, 1 - 606
Target Start/End: Original strand, 54903700 - 54904305
Alignment:
| Q |
1 |
aaaccatgtaccatggaactagtgtctccattagaagaagcaagataatccaaggtattgttgaaggaagaactcgcattttgatgttgtgtgtaccatg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54903700 |
aaaccatgtaccatggaactagtgtctccattagaagaagcaagataatccaaggtattgttgaaggaagaactcgcattttgatgttgtgtgtaccatg |
54903799 |
T |
|
| Q |
101 |
gagcatttataacattcccaagtaagccatcttgacattgcattgtttcctccaaaggaacagcaaccatgtctgtcgaagaaaaatgagaactgggaga |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
54903800 |
gagcatttataacattcccaagtaagccatcttgacattgcattgtttcctccaaaggaacagcaacaatgtctgtcgaagaaaaatgagaactgggaga |
54903899 |
T |
|
| Q |
201 |
agcaaacttaaagttattgtgcaacatttgatcattgttaaaatcctcactcaatggaacagaattggaagcaaagttagaggaaccacttgtgacgggg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54903900 |
agcaaacttaaagttattgtgcaacatttgatcattgttaaaatcctcactcaatggaacagaattggaagcaaagttagaggaaccacttgtgacgggg |
54903999 |
T |
|
| Q |
301 |
ttaaaagattgtgttgtcacagcagcaccttcaacatgagagtgattgataaatgctactgatttatgtgtttgtatgtgattgcttgagatgcaagaaa |
400 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
54904000 |
ttaaaagattgtgttttcacagcagcaccttcaacatgagagtgattgataaatgctcctgatttatgtgtttgtatgtgattgcttgagatgcaagaaa |
54904099 |
T |
|
| Q |
401 |
gagaaacatttgcattattgacagtggctccgatgtcttggaagctagaggaatctgtaactgcatttgaatcatcaattggacttaaattaatgttatc |
500 |
Q |
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| T |
54904100 |
gagaaacatttgcattattgacagtggctccgatgtcttggaagctagaggaatctgtaactgcatttgaatcatcaattggacttaaattaatgttatc |
54904199 |
T |
|
| Q |
501 |
aggcagataaatattctgctgaaactggttgatgtccattgacgtttgaatgccatgtacggaactcgaactttcactttcagaaaacattggtgtctca |
600 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
54904200 |
aggcagataaatattctgctgaaactggttgatgtccattgacgtttgaatgccatgtacagaactcgaactttcactttcagaaaacattggtgtctcg |
54904299 |
T |
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| Q |
601 |
aaattg |
606 |
Q |
| |
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|||||| |
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| T |
54904300 |
aaattg |
54904305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 47 - 546
Target Start/End: Original strand, 54887603 - 54888123
Alignment:
| Q |
47 |
aatccaaggtattgttgaaggaagaactcgcattttgatgttgtgtgtaccatggagcatttataacattcccaagtaagccatcttgacattgcattgt |
146 |
Q |
| |
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||||||||||||||||||||||||||| | ||||||| || || ||||| |||| ||| ||| |||| |||||||||| ||||||||||||||||| || |
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| T |
54887603 |
aatccaaggtattgttgaaggaagaacccacattttgctgatgcgtgtaacatgaagccgttacaacactcccaagtaatccatcttgacattgcatcgt |
54887702 |
T |
|
| Q |
147 |
ttcctccaaaggaacagcaaccatgtctgtcgaagaaaaat---------------------gagaactgggagaagcaaacttaaagttattgtgcaac |
225 |
Q |
| |
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|||||| ||||||||| ||| | | | |||||||||||| |||||||| | || |||||||| ||| ||||||| | |
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| T |
54887703 |
ttcctctaaaggaacatcaatgacgcgtatcgaagaaaaatcatctggatttttcttaaattgagaactgagtgaggcaaactttaagctattgtgagat |
54887802 |
T |
|
| Q |
226 |
atttgatcattgttaaaatcctcactcaatggaacagaattggaagcaaagttagaggaaccacttgtgacggggttaaaagattgtgttgtcacagcag |
325 |
Q |
| |
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||||||||||| ||||||||||||||||||||| || |||||||||||||||| ||||||||||||| | ||||||||||||| | | || ||||| |
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| T |
54887803 |
atttgatcattattaaaatcctcactcaatggagaaggattggaagcaaagttataggaaccacttgtagcagggttaaaagatttttgttccatagcag |
54887902 |
T |
|
| Q |
326 |
caccttcaacatgagagtgattgataaatgctactgatttatgtgtttgtatgtgattgcttgagatgcaagaaagagaaacatttgcattattgacagt |
425 |
Q |
| |
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|||| ||||| | |||||| || |||||| ||| ||||||||||||| ||||||||||||||||||||||||| || |||||||||||| ||| | |
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| T |
54887903 |
gacctccaacagatgggtgatttatgaatgctcttgaattatgtgtttgtaggtgattgcttgagatgcaagaaagaaaactatttgcattattaacatt |
54888002 |
T |
|
| Q |
426 |
ggctccgatgtcttggaagctagaggaatctgtaactgcatttgaatcatcaattggacttaaattaatgttatcaggcagataaatattctgctgaaac |
525 |
Q |
| |
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|||| |||||||||||||| ||| |||||||||| |||| |||||||||||||||||||||| || |||||| |||| | ||||| ||||||||||| |
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| T |
54888003 |
agctctgatgtcttggaagccagaagaatctgtaaatgcacttgaatcatcaattggacttaatttcatgttaccaggtgggtaaatgttctgctgaaat |
54888102 |
T |
|
| Q |
526 |
tggttgatgtccattgacgtt |
546 |
Q |
| |
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||||| || |||| ||||||| |
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| T |
54888103 |
tggttaatttccactgacgtt |
54888123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 187 - 530
Target Start/End: Original strand, 54893388 - 54893731
Alignment:
| Q |
187 |
tgagaactgggagaagcaaacttaaagttattgtgcaacatttgatcattgttaaaatcctcactcaatggaacagaattggaagcaaagttagaggaac |
286 |
Q |
| |
|
|||||||||||||| ||||| || ||| ||||| | ||||||||||||||||||||||||||||||||| || |||||||||||||||||| |||| |
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| T |
54893388 |
tgagaactgggagaggcaaaatttaagctattgccagaaatttgatcattgttaaaatcctcactcaatggagaaggattggaagcaaagttagatgaac |
54893487 |
T |
|
| Q |
287 |
cacttgtgacggggttaaaagattgtgttgtcacagcagcaccttcaacatgagagtgattgataaatgctactgatttatgtgtttgtatgtgattgct |
386 |
Q |
| |
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|| ||| | || |||||||||| || | ||| ||| ||| ||||| ||||||||| | ||||||| |||| ||||||||| || || |||||| |
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| T |
54893488 |
catatgtagcaggattaaaagattttggttccacgtaagcccctccaacagaagagtgatttacaaatgctcctgaattatgtgttgataggttattgct |
54893587 |
T |
|
| Q |
387 |
tgagatgcaagaaagagaaacatttgcattattgacagtggctccgatgtcttggaagctagaggaatctgtaactgcatttgaatcatcaattggactt |
486 |
Q |
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| T |
54893588 |
tgagatgcaagaaagagaactatttgcattattaacagtatctctgatgtcttggaagccagaagaaactgtaaaagcacttgtataatcaattggattt |
54893687 |
T |
|
| Q |
487 |
aaattaatgttatcaggcagataaatattctgctgaaactggtt |
530 |
Q |
| |
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||||| ||||| || || ||||||| ||| ||||||||||||| |
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| T |
54893688 |
aaattcttgttaccaagcggataaatgttccgctgaaactggtt |
54893731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 7 - 166
Target Start/End: Original strand, 54893190 - 54893352
Alignment:
| Q |
7 |
tgtaccatggaactagtgtctccattagaagaagcaagataatccaaggtattgttgaaggaagaactcgcattttgatgttg---tgtgtaccatggag |
103 |
Q |
| |
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||||||||||||||||||||| ||||| ||||||||||| | ||||||||||||||||||||||| || ||||||| || || ||||| |||| || |
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| T |
54893190 |
tgtaccatggaactagtgtcttcattataagaagcaagagagtccaaggtattgttgaaggaagagctgacattttgctgctgcgtcgtgtaacatgaag |
54893289 |
T |
|
| Q |
104 |
catttataacattcccaagtaagccatcttgacattgcattgtttcctccaaaggaacagcaa |
166 |
Q |
| |
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| |||| ||||||||||||||||||||||||||||||||| | ||||||| |||||||||||| |
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|
| T |
54893290 |
cctttacaacattcccaagtaagccatcttgacattgcatcgcttcctccgaaggaacagcaa |
54893352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 339 - 416
Target Start/End: Complemental strand, 11186503 - 11186426
Alignment:
| Q |
339 |
agagtgattgataaatgctactgatttatgtgtttgtatgtgattgcttgagatgcaagaaagagaaacatttgcatt |
416 |
Q |
| |
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||||||||||||||||||| |||| || | |||| ||| ||||||||||||||||||||||||||| ||||||||| |
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| T |
11186503 |
agagtgattgataaatgctgctgaattttatgttagtagttgattgcttgagatgcaagaaagagaacaatttgcatt |
11186426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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