View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19687_low_50 (Length: 254)
Name: NF19687_low_50
Description: NF19687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19687_low_50 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 15 - 254
Target Start/End: Complemental strand, 42748190 - 42747951
Alignment:
| Q |
15 |
cacagaagataggcaaaaggtatttacatacctcacaatttttctaacaatcatttttccaattcccattctcctcaaggatggaataacctgcaagaca |
114 |
Q |
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| T |
42748190 |
cacagaagataggcaaaaggtatttacatacctcacaatttttctaacaatcatttttccaattcccattctcctcaaggatggaataacctgcaagaca |
42748091 |
T |
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| Q |
115 |
ctgaagtatgttgaataatgcccgtcaactatgggaaaacgcaaaatttaatatcctcaaatcaattccaaaaattgaaaaggggaaacacaaaacatgt |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42748090 |
ctgaagtatgttgaataatgcccgtcaactatgggaaaacgcaaaattcaatatcctcaaatcaattccaaaaattgaaaaggggaaacacaaaacatgt |
42747991 |
T |
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| Q |
215 |
ttttcattaacaagtacttgtagatatagcctataggccc |
254 |
Q |
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| T |
42747990 |
ttttcattaacaagtacttgtagatatagcctataggccc |
42747951 |
T |
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