View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19687_low_51 (Length: 252)

Name: NF19687_low_51
Description: NF19687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19687_low_51
NF19687_low_51
[»] chr6 (6 HSPs)
chr6 (15-252)||(2902113-2902350)
chr6 (141-243)||(2904186-2904289)
chr6 (15-130)||(2904226-2904342)
chr6 (16-95)||(2902075-2902151)
chr6 (16-95)||(2904135-2904215)
chr6 (198-243)||(2892017-2892060)
[»] chr3 (7 HSPs)
chr3 (31-130)||(34503044-34503141)
chr3 (15-130)||(34485211-34485328)
chr3 (46-130)||(27614455-27614538)
chr3 (141-243)||(34485170-34485273)
chr3 (141-243)||(34503003-34503106)
chr3 (141-243)||(27614414-27614517)
chr3 (176-243)||(34485298-34485364)
[»] chr5 (2 HSPs)
chr5 (46-129)||(14707935-14708018)
chr5 (156-202)||(14707935-14707981)


Alignment Details
Target: chr6 (Bit Score: 226; Significance: 1e-125; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 15 - 252
Target Start/End: Complemental strand, 2902350 - 2902113
Alignment:
Q  15 aatatctttagaaacatttttatgtaaaaataattaataagcaatatatttctataaatcaacactctttaatttatctttatctagaagtaaaaagaat 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  2902350 aatatctttagaaacatttttatgtaaaaataattaataagcaatatatttctataaatcaacactctttaatttatctttatctagaagtaaaaagtat 2902251  T
Q  115 attatcactattttttctctttttcaataaattaacactccttaatttatctctatctagaagtaaaaagtatattatcactattttttcttgaccaaca 214  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  2902250 attatcactattttttctctttttcaataaattagcactccttaatttatctctatctagaagtaaaaagtatattatcactattttttcttgatcaaca 2902151  T
Q  215 tatctttagaaatattttcatataaaaaataataagaa 252  Q
    ||||||||||||||||||||||||||||||||||||||    
T  2902150 tatctttagaaatattttcatataaaaaataataagaa 2902113  T

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Target: chr6; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 141 - 243
Target Start/End: Complemental strand, 2904289 - 2904186
Alignment:
Q  141 ataaattaacactccttaatttatctctatctagaagtaaaaa-gtatattatcactattttttcttgaccaacatatctttagaaatattttcatataa 239  Q
    |||||||||| ||| | ||||||| | ||||||||| |||||| |||||||||||||||||||| |  ||||  ||||||||||||||||||||||||||    
T  2904289 ataaattaacgctcttcaatttatatttatctagaaataaaaaagtatattatcactattttttttcaaccagtatatctttagaaatattttcatataa 2904190  T
Q  240 aaaa 243  Q
    ||||    
T  2904189 aaaa 2904186  T

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Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 15 - 130
Target Start/End: Complemental strand, 2904342 - 2904226
Alignment:
Q  15 aatatctttagaaacatttttatgtaaaaataattaataagcaatatatttctataaatcaacactctttaatttatctttatctagaagt-aaaaagaa 113  Q
    |||||||||||||| |||||||  ||||||| ||| ||| | || | | |||||||||| ||| ||||| ||||||| ||||||||||| | |||||| |    
T  2904342 aatatctttagaaatatttttaaataaaaatgatttataggaaaaaaaattctataaattaacgctcttcaatttatatttatctagaaataaaaaagta 2904243  T
Q  114 tattatcactatttttt 130  Q
    |||||||||||||||||    
T  2904242 tattatcactatttttt 2904226  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 95
Target Start/End: Complemental strand, 2902151 - 2902075
Alignment:
Q  16 atatctttagaaacatttttatgtaaaaataattaataagcaatatatttctataaatcaacactctttaatttatcttt 95  Q
    ||||||||||||| ||||| || ||||||    ||||||| ||||| ||||||||||| | |||||||||||||||||||    
T  2902151 atatctttagaaatattttcatataaaaaa---taataagaaatatttttctataaattatcactctttaatttatcttt 2902075  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 95
Target Start/End: Complemental strand, 2904215 - 2904135
Alignment:
Q  16 atatctttagaaacatttttatgtaaaaataat-taataagcaatatatttctataaatcaacactctttaatttatcttt 95  Q
    ||||||||||||| ||||| || |||||| ||  ||||||| || || ||||||||||| || ||||||||||||||||||    
T  2904215 atatctttagaaatattttcatataaaaaaaaaataataagaaagatttttctataaattaaaactctttaatttatcttt 2904135  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 243
Target Start/End: Complemental strand, 2892060 - 2892017
Alignment:
Q  198 ttttttcttgaccaacatatctttagaaatattttcatataaaaaa 243  Q
    |||||||||||||||  |||||||||||||||||| ||||||||||    
T  2892060 ttttttcttgaccaa--tatctttagaaatatttttatataaaaaa 2892017  T

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Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 31 - 130
Target Start/End: Complemental strand, 34503141 - 34503044
Alignment:
Q  31 tttttatgtaaaaataattaataagcaatatatttctataaatcaacactctttaatttatctttatctagaagtaaaaagaatattatcactatttttt 130  Q
    ||||||| |||||| ||||||||| |||||| ||| ||||||| ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  34503141 tttttatataaaaa-aattaataaccaatat-tttatataaatgaacactctttaatttatctttatctggaagtaaaaagtatattatcactatttttt 34503044  T

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Target: chr3; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 15 - 130
Target Start/End: Complemental strand, 34485328 - 34485211
Alignment:
Q  15 aatatctttagaaacatttttatgtaaaaataa----ttaataagcaatatatttctataaatcaacactctttaatttatctttatctagaagtaaaaa 110  Q
    |||||||||||||| |||||||| |||||| ||    |||| ||||||||| ||| ||||||| |||| |||||||||||||||||||||||||||||||    
T  34485328 aatatctttagaaatatttttatataaaaaaaaaatcttaa-aagcaatat-tttgtataaattaacaatctttaatttatctttatctagaagtaaaaa 34485231  T
Q  111 gaatattatcactatttttt 130  Q
    | ||||||||||||||||||    
T  34485230 gtatattatcactatttttt 34485211  T

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Target: chr3; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 46 - 130
Target Start/End: Complemental strand, 27614538 - 27614455
Alignment:
Q  46 aattaataagcaatatatttctataaatcaacactctttaatttatctttatctagaagtaaaaagaatattatcactatttttt 130  Q
    |||||||||||||||| ||| ||||||| || |||||||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  27614538 aattaataagcaatat-tttatataaattaagactctttaatttatctttatctggaagtaaaaagtatattatcactatttttt 27614455  T

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Target: chr3; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 141 - 243
Target Start/End: Complemental strand, 34485273 - 34485170
Alignment:
Q  141 ataaattaacactccttaatttatctctatctagaagtaaaaagtatattatcactatt-ttttcttgaccaacatatctttagaaatattttcatataa 239  Q
    ||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||| ||||||  ||||  || |||| |||||||||||||  |||    
T  34485273 ataaattaacaatctttaatttatctttatctagaagtaaaaagtatattatcactatttttttctcaaccattatttcttgagaaatattttcaactaa 34485174  T
Q  240 aaaa 243  Q
    ||||    
T  34485173 aaaa 34485170  T

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Target: chr3; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 141 - 243
Target Start/End: Complemental strand, 34503106 - 34503003
Alignment:
Q  141 ataaattaacactccttaatttatctctatctagaagtaaaaagtatattatcactatt-ttttcttgaccaacatatctttagaaatattttcatataa 239  Q
    |||||| ||||||| ||||||||||| ||||| |||||||||||||||||||||||||| |||||| |||||  || |||| |||||||||||||  |||    
T  34503106 ataaatgaacactctttaatttatctttatctggaagtaaaaagtatattatcactatttttttctcgaccattatttcttgagaaatattttcaactaa 34503007  T
Q  240 aaaa 243  Q
    ||||    
T  34503006 aaaa 34503003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 141 - 243
Target Start/End: Complemental strand, 27614517 - 27614414
Alignment:
Q  141 ataaattaacactccttaatttatctctatctagaagtaaaaagtatattatcactatt-ttttcttgaccaacatatctttagaaatattttcatataa 239  Q
    ||||||||| |||| ||||||||||| ||||| |||||||||||||||||||||||||| |||||| ||||   || |||| |||||||||||||  |||    
T  27614517 ataaattaagactctttaatttatctttatctggaagtaaaaagtatattatcactatttttttctcgaccgttatttcttgagaaatattttcaactaa 27614418  T
Q  240 aaaa 243  Q
    ||||    
T  27614417 aaaa 27614414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 176 - 243
Target Start/End: Complemental strand, 34485364 - 34485298
Alignment:
Q  176 agtaaaaagtatattatcactatttttt-cttgaccaacatatctttagaaatattttcatataaaaaa 243  Q
    |||||||||||||||| |||| |||||| || || |||  |||||||||||||||||| ||||||||||    
T  34485364 agtaaaaagtatattaccactgtttttttctcgatcaa--tatctttagaaatatttttatataaaaaa 34485298  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 129
Target Start/End: Complemental strand, 14708018 - 14707935
Alignment:
Q  46 aattaataagcaatatatttctataaatcaacactctttaatttatctttatctagaagtaaaaagaatattatcactattttt 129  Q
    |||||||||| ||||  ||| ||||||  || | ||||||||||||||||||||| |||||||||| ||| ||||||| |||||    
T  14708018 aattaataagaaataattttttataaaataataatctttaatttatctttatctataagtaaaaagtataatatcactgttttt 14707935  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 202
Target Start/End: Complemental strand, 14707981 - 14707935
Alignment:
Q  156 ttaatttatctctatctagaagtaaaaagtatattatcactattttt 202  Q
    ||||||||||| |||||| |||||||||||||| ||||||| |||||    
T  14707981 ttaatttatctttatctataagtaaaaagtataatatcactgttttt 14707935  T

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