View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19687_low_53 (Length: 250)
Name: NF19687_low_53
Description: NF19687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19687_low_53 |
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Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 44379160 - 44378918
Alignment:
| Q |
1 |
tatgaaagacaagaagggaaccaagcttgtcctcactgcaaaactaaatacaaacgcataaagggtaagccttcaaccgacnnnnnnnn-ctttactttg |
99 |
Q |
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| T |
44379160 |
tatgaaagacgagaagggaaccaagcttgtcctcactgcaaaactaaatacaaacgcataaagggtaagccttcaaccgactttttttttctttactttg |
44379061 |
T |
|
| Q |
100 |
ttatatataagtggaagaaaaagttttggctaacaaagcagagccaatatttgggtatggcactctgcagttggagacgtaggcacatttggccgaactc |
199 |
Q |
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| T |
44379060 |
ttatatataagtggaagaaaaagttttggctaacaaagcagagccaatatttgggtatggcactctgcagttggagacgtaggcacatttggccgaactc |
44378961 |
T |
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| Q |
200 |
cctgatcaaatcccgcgtgttatttgtttgtatttttcatatc |
242 |
Q |
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| T |
44378960 |
cctgatcaaatcccgcgtgttatttgtttgtatttttcatatc |
44378918 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 210
Target Start/End: Complemental strand, 12478604 - 12478556
Alignment:
| Q |
162 |
ctctgcagttggagacgtaggcacatttggccgaactccctgatcaaat |
210 |
Q |
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| T |
12478604 |
ctctgcagtaggagacgtaggcacaattggccaaacaccgtgatcaaat |
12478556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 236
Target Start/End: Original strand, 29363125 - 29363201
Alignment:
| Q |
160 |
cactctgcagttggagacgtaggcacatttggccgaactccctgatcaaatcccgcgtgttatttgtttgtattttt |
236 |
Q |
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| T |
29363125 |
cactctgcagtcagagacgtaggtacatttggccgaacactatgatcaaatctcgtgttttatctgtttgtgttttt |
29363201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 236
Target Start/End: Complemental strand, 6522140 - 6522066
Alignment:
| Q |
162 |
ctctgcagttggagacgtaggcacatttggccgaactccctgatcaaatcccgcgtgttatttgtttgtattttt |
236 |
Q |
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||||||||| |||||||||||||| ||||| |||| || |||||||||| || ||||| ||||| || |||||| |
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| T |
6522140 |
ctctgcagtctgagacgtaggcacaattggctgaaccccatgatcaaatctcgagtgttctttgtctgcattttt |
6522066 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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