View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19687_low_55 (Length: 250)
Name: NF19687_low_55
Description: NF19687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19687_low_55 |
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Alignment Details
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 14 - 239
Target Start/End: Original strand, 39099480 - 39099711
Alignment:
| Q |
14 |
agggttggaaagacaaagtataattggtaagggcatcatggttgtttgtgaactccaacaattttgcacatgccatattcatggattttgatcggttact |
113 |
Q |
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| T |
39099480 |
agggttggaaagacaaagtataattggtaagggcatcatggttgtttgtgaactccaacaattttgcacatgccatattcatggattttgatcggttact |
39099579 |
T |
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| Q |
114 |
tagccaatagttggttttgtatgtccccataattagatagatcattttaatcttgttagt------tatttatatagtttattttgtatggagttttata |
207 |
Q |
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| T |
39099580 |
tagccaatagttggttttgtatgtccccataattagatagatcattttaatcttgttacttacatctatttatatagtttatgttgtatggagttttata |
39099679 |
T |
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| Q |
208 |
tcttgaagagatatcaacctcatcaaacaagg |
239 |
Q |
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| T |
39099680 |
acttgaagagatatcaacctcatcaaacaagg |
39099711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 176 - 250
Target Start/End: Original strand, 39194713 - 39194790
Alignment:
| Q |
176 |
tttatatagtttattttgt---atggagttttatatcttgaagagatatcaacctcatcaaacaagggcgaaaacaac |
250 |
Q |
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||||||||||||||||| | ||| | ||||||| |||||| |||||||||||||||||||||||||||||| |||| |
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| T |
39194713 |
tttatatagtttatttttttttatgaaattttataacttgaaaagatatcaacctcatcaaacaagggcgaaagcaac |
39194790 |
T |
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