View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19687_low_56 (Length: 250)
Name: NF19687_low_56
Description: NF19687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19687_low_56 |
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| [»] chr6 (4 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 176; Significance: 6e-95; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 11 - 250
Target Start/End: Complemental strand, 22997316 - 22997074
Alignment:
| Q |
11 |
taatactataaaaatacaatataaaccaagctaatgatttagcattggtgatatacatttgatacgtcattgtaggttagggaggatgtgtcattagatt |
110 |
Q |
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| T |
22997316 |
taatactataaaaatacaatataaaccaagctaatgatttagcattggtgatatacatttgatacgtcattgtaggctagggaggatgtgtcattagatt |
22997217 |
T |
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| Q |
111 |
tagggacaataggctcaaacca--ttaagttagatacaacccggttatgtcataaagtattgccc-nnnnnnnnttaacatggactcaaactctcttatt |
207 |
Q |
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| T |
22997216 |
tagggacaataggctcaaaccaatgtaagttagataaaacccggttatgtcataaagtattgcccaaaaaaaatttaatatggactcaaactctcttatt |
22997117 |
T |
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| Q |
208 |
gtaggttaacataagctaaaattgcttttctaacataaaaaac |
250 |
Q |
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| T |
22997116 |
gtaggttaacataagcgaaaattgcttttctaacattaaaaac |
22997074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 11 - 250
Target Start/End: Original strand, 23791085 - 23791327
Alignment:
| Q |
11 |
taatactataaaaatacaatataaaccaagctaatgatttagcattggtgatatacatttgatacgtcattgtaggttagggaggatgtgtcattagatt |
110 |
Q |
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| T |
23791085 |
taatactataaaaatacaatataaaccaagctaatgatttagcattggtgatatacatttgatacgtcattgtaggctagggaggatgtgtcattagatt |
23791184 |
T |
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| Q |
111 |
tagggacaataggctcaaacca--ttaagttagatacaacccggttatgtcataaagtattgccc-nnnnnnnnttaacatggactcaaactctcttatt |
207 |
Q |
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| T |
23791185 |
tagggacaataggctcaaaccaatgtaagttagataaaacccggttatgtcataaagtattgcccaaaaaaaatttaatatggactcaaactctcttatt |
23791284 |
T |
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| Q |
208 |
gtaggttaacataagctaaaattgcttttctaacataaaaaac |
250 |
Q |
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| T |
23791285 |
gtaggttaacataagcgaaaattgcttttctaacattaaaaac |
23791327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 11 - 173
Target Start/End: Complemental strand, 18143842 - 18143678
Alignment:
| Q |
11 |
taatactataaaaatacaatataaaccaagctaatgatttagcattggtgatatacatttgatacgtcattgtaggttagggaggatgtgtcattagatt |
110 |
Q |
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| T |
18143842 |
taatacaataaaagtataatataaaccaaactaatgatttagtattggtgatatacatttgatacctcatcgtaggttagggaagatgtgtcattagatt |
18143743 |
T |
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| Q |
111 |
tagggacaataggctcaaacca--ttaagttagatacaacccggttatgtcataaagtattgccc |
173 |
Q |
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| T |
18143742 |
tagggacaataggcttaaaccaatgtaagttagatacaacatggttatgtcataaagtattgccc |
18143678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 190 - 248
Target Start/End: Complemental strand, 18142562 - 18142504
Alignment:
| Q |
190 |
gactcaaactctcttattgtaggttaacataagctaaaattgcttttctaacataaaaa |
248 |
Q |
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|||||| ||||||||||||||||||||| ||||| ||||||||||||||||||| |||| |
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| T |
18142562 |
gactcatactctcttattgtaggttaacctaagcgaaaattgcttttctaacatcaaaa |
18142504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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