View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19687_low_59 (Length: 248)
Name: NF19687_low_59
Description: NF19687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19687_low_59 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 41 - 238
Target Start/End: Original strand, 4840866 - 4841063
Alignment:
| Q |
41 |
aataccatataatagcactttctataaaagggctaatataggtgtcacgttataatagcatgcgtaacggaagtgctattattaatattagagtcaatct |
140 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4840866 |
aataccatataatagcactttctataaaagggctaatataggtgtcacgttataatagcatgcgtaacggaagtgctattattaatattagagtcaatct |
4840965 |
T |
|
| Q |
141 |
tttcatagcattttctctaaaagtgctattaaattagcgtttccgttataatagtccttatgaacatcaaattaagtttggtatttttcattattcat |
238 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4840966 |
tttcatagcattttctctaaaagtgctattaaattagcgtttccgttataatagtccttatgaacatcaaattaagtttggtatttttcattattcat |
4841063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 41 - 178
Target Start/End: Complemental strand, 38285828 - 38285691
Alignment:
| Q |
41 |
aataccatataatagcactttctataaaagggctaatataggtgtcacgttataatagcatgcgtaacggaagtgctattattaatattagagtcaatct |
140 |
Q |
| |
|
||||||||||||||||||||||||||||| | ||||||||| |||||||||||||||||| | ||||||||| ||||||||||||||||| ||||||||| |
|
|
| T |
38285828 |
aataccatataatagcactttctataaaaagactaatatagatgtcacgttataatagcacgggtaacggaaatgctattattaatattatagtcaatct |
38285729 |
T |
|
| Q |
141 |
tttcatagcattttctctaaaagtgctattaaattagc |
178 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
38285728 |
tttcatagcattttttctaaaagtgctattaaattagc |
38285691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 186 - 238
Target Start/End: Original strand, 4834278 - 4834331
Alignment:
| Q |
186 |
ttataatagtccttatgaacatcaaa-ttaagtttggtatttttcattattcat |
238 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
4834278 |
ttataatagtccttatgaacatcaaaattaagtttggtatttttcattattcat |
4834331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 131; Significance: 4e-68; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 41 - 179
Target Start/End: Complemental strand, 28157057 - 28156919
Alignment:
| Q |
41 |
aataccatataatagcactttctataaaagggctaatataggtgtcacgttataatagcatgcgtaacggaagtgctattattaatattagagtcaatct |
140 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |
|
|
| T |
28157057 |
aataccatataatagcactttctataaaagggctaatataggtgtcacgttataatagcatgcgtaacggaaatgctattattaatattatagtcaatct |
28156958 |
T |
|
| Q |
141 |
tttcatagcattttctctaaaagtgctattaaattagcg |
179 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28156957 |
tttcatagcattttctctaaaagtgctattaaattagcg |
28156919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 131; Significance: 4e-68; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 41 - 179
Target Start/End: Original strand, 13070101 - 13070239
Alignment:
| Q |
41 |
aataccatataatagcactttctataaaagggctaatataggtgtcacgttataatagcatgcgtaacggaagtgctattattaatattagagtcaatct |
140 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
13070101 |
aataccatataatagcactttctataaaagggctaatataggtgtcacgttataatagcttgcgtaacggaaatgctattattaatattagagtcaatct |
13070200 |
T |
|
| Q |
141 |
tttcatagcattttctctaaaagtgctattaaattagcg |
179 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13070201 |
tttcatagcattttctctaaaagtgctattaaattagcg |
13070239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 41 - 179
Target Start/End: Original strand, 14361258 - 14361396
Alignment:
| Q |
41 |
aataccatataatagcactttctataaaagggctaatataggtgtcacgttataatagcatgcgtaacggaagtgctattattaatattagagtcaatct |
140 |
Q |
| |
|
|||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
14361258 |
aataccatataacagcactttgtataaaagggctaatataggtgtcacgttataatagcatgcgtaacggaaatgctattattaatattagagtcaatct |
14361357 |
T |
|
| Q |
141 |
tttcatagcattttctctaaaagtgctattaaattagcg |
179 |
Q |
| |
|
||| ||||||||||||||||||||| ||||||||||||| |
|
|
| T |
14361358 |
tttgatagcattttctctaaaagtgttattaaattagcg |
14361396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University