View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19687_low_6 (Length: 560)
Name: NF19687_low_6
Description: NF19687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19687_low_6 |
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| [»] scaffold0110 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 420; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 16 - 548
Target Start/End: Original strand, 24143463 - 24143998
Alignment:
| Q |
16 |
cacgttcatactttagaagccgaactatggtttatattatatttgctgaacaaaaggtaattttggaagnnnnnnnnta---tggtgtgtaagtaacgca |
112 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| || |||||||||||||||||| |
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| T |
24143463 |
cacgttcatactttagaagccgaactatggtttagattatatttgccgaacaaaaggtaattttggaagaaaaaaaataatatggtgtgtaagtaacgca |
24143562 |
T |
|
| Q |
113 |
tatgatgnnnnnnngtaatagccataataaaattataggaacaaaatttgtcgttcaaaattttaaggccctgtgttataggcctcattgcacaccctca |
212 |
Q |
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| T |
24143563 |
tatggtgaaaaaaagtaatagccataataaaattataggaacaaaatttgtcattcaaaattttaaggccctgtgttataggcctcattgcacaccctca |
24143662 |
T |
|
| Q |
213 |
gggccggcnnnnnnnaatccctacaaatactaaaagagtgacaaatttgatcaaaattttgcaatttcaaagatcaatttataatattgatattgtgata |
312 |
Q |
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| T |
24143663 |
gggccggctttttctaacccctacaaatactaaaagagtgacaaatttgatcacaattttgcaatttcaaagatcaatttataatattgaaaatgtgata |
24143762 |
T |
|
| Q |
313 |
tactagattgatacaattctacaatttcaattatcacttcaaatatactgcttgtagtctatattgtggttgtggtgatggatctgacttaatgagttat |
412 |
Q |
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| T |
24143763 |
tactagattgatacaattctacaatttcaattatcacttcaaatatactgcttgtagtctatattgtggttgtggtgatggatctgacttaatgagttat |
24143862 |
T |
|
| Q |
413 |
atacttgctgtggaatatgcagttcactgatgtgacctacaaggtagtactcaaaggcatgacatcaagtgagaagaaagatatcttgaatggcataagt |
512 |
Q |
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| T |
24143863 |
atacttgctgtggaatatgcagttcactgatgtgacctacaaggtagtactcaaaggcatgacatcaagtgggaagaaagatatcttgaatggcataagt |
24143962 |
T |
|
| Q |
513 |
ggttctgtaaatccaggtgaagttttggcaatgatg |
548 |
Q |
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| T |
24143963 |
ggttctgtaaatccaggtgaagttttggcaatgatg |
24143998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 427 - 548
Target Start/End: Original strand, 24125870 - 24125991
Alignment:
| Q |
427 |
atatgcagttcactgatgtgacctacaaggtagtactcaaaggcatgacatcaagtgagaagaaagatatcttgaatggcataagtggttctgtaaatcc |
526 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||| |||| || ||||||||||||||||| |
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| T |
24125870 |
atatgcagttcactgatgtgacctacaaggtagtactaaaaggcatgacatcaagtgaggagaaggatatcttgtatgggatcagtggttctgtaaatcc |
24125969 |
T |
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| Q |
527 |
aggtgaagttttggcaatgatg |
548 |
Q |
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| T |
24125970 |
aggtgaagttttggcattgatg |
24125991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 256 - 343
Target Start/End: Complemental strand, 12241433 - 12241346
Alignment:
| Q |
256 |
aatttgatcaaaattttgcaatttcaaagatcaatttataatattgatattgtgatatactagattgatacaattctacaatttcaat |
343 |
Q |
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| T |
12241433 |
aatttgattaaaattttgcaatttcaagaatcattttaaaatatcgataatgtgagggactacattgatacagccctacaatttcaat |
12241346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 430 - 548
Target Start/End: Complemental strand, 43533465 - 43533347
Alignment:
| Q |
430 |
tgcagttcactgatgtgacctacaaggtagtactcaaaggcatgacatcaagtgagaagaaagatatcttgaatggcataagtggttctgtaaatccagg |
529 |
Q |
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|||||||||| |||||||| |||||| |||| | |||||||||||| ||| || | |||||||||||||| || || | ||||| |||||||||||| |
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| T |
43533465 |
tgcagttcacggatgtgacatacaagatagtgattaaaggcatgacaacaaatgttgaaaaagatatcttgaaagggatcactggttgtgtaaatccagg |
43533366 |
T |
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| Q |
530 |
tgaagttttggcaatgatg |
548 |
Q |
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| T |
43533365 |
ggaagttttagcattgatg |
43533347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0110 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0110
Description:
Target: scaffold0110; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 256 - 342
Target Start/End: Original strand, 33145 - 33231
Alignment:
| Q |
256 |
aatttgatcaaaattttgcaatttcaaagatcaatttataatattgatattgtgatatactagattgatacaattctacaatttcaa |
342 |
Q |
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| T |
33145 |
aatttgatgaaaattttgtaattttaaagatcattttggaatatcgataatgtgaaagactagatttatacagtcctacaatttcaa |
33231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 232 - 310
Target Start/End: Original strand, 40258789 - 40258867
Alignment:
| Q |
232 |
cctacaaatactaaaagagtgacaaatttgatcaaaattttgcaatttcaaagatcaatttataatattgatattgtga |
310 |
Q |
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| T |
40258789 |
cctacaaatactaacatagggacaaatttgattaaaattttgtaatttcagagatcatttttgaatatcgataatgtga |
40258867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 252 - 299
Target Start/End: Original strand, 4156013 - 4156060
Alignment:
| Q |
252 |
gacaaatttgatcaaaattttgcaatttcaaagatcaatttataatat |
299 |
Q |
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| T |
4156013 |
gacaaatttgattaaaattttgcaatttcagagatcattttagaatat |
4156060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 268 - 342
Target Start/End: Original strand, 26270913 - 26270987
Alignment:
| Q |
268 |
attttgcaatttcaaagatcaatttataatattgatattgtgatatactagattgatacaattctacaatttcaa |
342 |
Q |
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||||||||||| ||| ||||| ||| |||||||||| ||||| | | |||||||||||||| ||||||||||| |
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| T |
26270913 |
attttgcaattccaatgatcattttggaatattgataatgtgagagattagattgatacaatcatacaatttcaa |
26270987 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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