View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19687_low_61 (Length: 243)
Name: NF19687_low_61
Description: NF19687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19687_low_61 |
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Alignment Details
Target: chr3 (Bit Score: 100; Significance: 1e-49; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 17 - 120
Target Start/End: Original strand, 42747454 - 42747557
Alignment:
| Q |
17 |
aacacttacctacatttttcaaatcaaagaaaaagaaataaactttttatgttttcttaataatagctcatgagttcaatttcatatcttggttcttggc |
116 |
Q |
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| T |
42747454 |
aacacttacctacatttttcaaatcaaagaaaaagaaataaactttttatgttttcttaataatagctcattagttcaatttcatatcttggttcttggc |
42747553 |
T |
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| Q |
117 |
catg |
120 |
Q |
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|||| |
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| T |
42747554 |
catg |
42747557 |
T |
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Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 178 - 239
Target Start/End: Original strand, 42747615 - 42747676
Alignment:
| Q |
178 |
actgaatttgtaccataattagaatatctaacaattctaacttaattaactagtgtaactaa |
239 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
42747615 |
actgaatttgtaccataattagaataactaacaattctaacttaattaactagtgtaactaa |
42747676 |
T |
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