View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19687_low_68 (Length: 227)

Name: NF19687_low_68
Description: NF19687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19687_low_68
NF19687_low_68
[»] chr6 (4 HSPs)
chr6 (7-227)||(22996778-22996998)
chr6 (7-227)||(23791403-23791623)
chr6 (7-128)||(18142173-18142295)
chr6 (115-226)||(18142314-18142425)
[»] chr4 (1 HSPs)
chr4 (152-225)||(48292329-48292402)
[»] chr2 (2 HSPs)
chr2 (158-224)||(28564270-28564336)
chr2 (152-222)||(8675560-8675630)
[»] chr7 (3 HSPs)
chr7 (168-224)||(22555367-22555424)
chr7 (171-227)||(37701341-37701398)
chr7 (180-224)||(18951033-18951077)
[»] chr3 (2 HSPs)
chr3 (171-227)||(29722743-29722798)
chr3 (180-224)||(50482322-50482366)


Alignment Details
Target: chr6 (Bit Score: 157; Significance: 1e-83; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 7 - 227
Target Start/End: Original strand, 22996778 - 22996998
Alignment:
Q  7 ttaataagggaaatgctaacaagtatccttgggacactgattaaggaatcaaatatagcattatattgaaaatttccgaatattgcctcaaataaattac 106  Q
    ||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||| |||||||||  ||||||||||||| | ||||    
T  22996778 ttaataagggaaatggtaacaagtatcattgggacactgattaagaaatcaaatatagcattatattggaaatttccggttattgcctcaaatgacttac 22996877  T
Q  107 ttggctaatggctagtgacattgtaagttgtgcttatgttgacatttgctgttttcacaatcaatgtttcctaataatacatggaaatgatagaaaaatc 206  Q
    |||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||| |||||||| ||||||||||||||||||||  ||||||||    
T  22996878 ttggctaatggctagtgacattgtaatttgtgcttctgttgacatttgctattttcacaaccaatgttttctaataatacatggaaatgaccgaaaaatc 22996977  T
Q  207 caacggtagttaactaccgtc 227  Q
    |||| ||||||||||||||||    
T  22996978 caactgtagttaactaccgtc 22996998  T

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Target: chr6; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 7 - 227
Target Start/End: Complemental strand, 23791623 - 23791403
Alignment:
Q  7 ttaataagggaaatgctaacaagtatccttgggacactgattaaggaatcaaatatagcattatattgaaaatttccgaatattgcctcaaataaattac 106  Q
    ||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||| |||||||||  ||||||||||||| | ||||    
T  23791623 ttaataagggaaatggtaacaagtatcattgggacactgattaagaaatcaaatatagcattatattggaaatttccggttattgcctcaaatgacttac 23791524  T
Q  107 ttggctaatggctagtgacattgtaagttgtgcttatgttgacatttgctgttttcacaatcaatgtttcctaataatacatggaaatgatagaaaaatc 206  Q
    |||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||| |||||||| ||||||||||||||||||||  ||||||||    
T  23791523 ttggctaatggctagtgacattgtaatttgtgcttctgttgacatttgctattttcacaaccaatgttttctaataatacatggaaatgaccgaaaaatc 23791424  T
Q  207 caacggtagttaactaccgtc 227  Q
    |||| ||||||||||||||||    
T  23791423 caactgtagttaactaccgtc 23791403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 7 - 128
Target Start/End: Original strand, 18142173 - 18142295
Alignment:
Q  7 ttaataagggaaatgctaacaagtatccttgggacactgattaaggaatcaaatatagcattatattgaaaatt-tccgaatattgcctcaaataaatta 105  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| ||||| | ||  | ||||||||||| | |||    
T  18142173 ttaataagggaaatgctaacaagtatccttgggacactgcttaaggaatcaaatatagcattgtattggaaattgtgcggttcttgcctcaaatgactta 18142272  T
Q  106 cttggctaatggctagtgacatt 128  Q
    |||||||||||||||||||||||    
T  18142273 cttggctaatggctagtgacatt 18142295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 115 - 226
Target Start/End: Original strand, 18142314 - 18142425
Alignment:
Q  115 tggctagtgacattgtaagttgtgcttatgttgacatttgctgttttcacaatcaatgtttcctaataatacatggaaatgatagaaaaatccaacggta 214  Q
    |||| ||||||||||||| ||||||||||||||||||||| ||||||||||| || ||||| ||||||| ||||| ||||||   ||||||| | |||||    
T  18142314 tggcaagtgacattgtaatttgtgcttatgttgacatttgttgttttcacaaccagtgttttctaataacacatgaaaatgaccaaaaaatcaagcggta 18142413  T
Q  215 gttaactaccgt 226  Q
    ||||||||||||    
T  18142414 gttaactaccgt 18142425  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 152 - 225
Target Start/End: Original strand, 48292329 - 48292402
Alignment:
Q  152 ttgctgttttcacaatcaatgtttcctaataatacatggaaatgatagaaaaatccaacggtagttaactaccg 225  Q
    ||||||||||||| |  ||||||||||||||| ||||||||||||   |||||  |||||||||||||||||||    
T  48292329 ttgctgttttcactacaaatgtttcctaataacacatggaaatgaccaaaaaactcaacggtagttaactaccg 48292402  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 158 - 224
Target Start/End: Original strand, 28564270 - 28564336
Alignment:
Q  158 ttttcacaatcaatgtttcctaataatacatggaaatgatagaaaaatccaacggtagttaactacc 224  Q
    |||||||| |||||||||||||| || |||||||||||||  ||||| ||| ||||| |||||||||    
T  28564270 ttttcacattcaatgtttcctaaaaacacatggaaatgatcaaaaaacccagcggtaattaactacc 28564336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 222
Target Start/End: Complemental strand, 8675630 - 8675560
Alignment:
Q  152 ttgctgttttcacaatcaatgtttcctaataatacatggaaatgatagaaaaatccaacggtagttaacta 222  Q
    ||||||||||||| | | ||||||||| |||| ||||||||||||   ||||| ||| |||||||||||||    
T  8675630 ttgctgttttcactacctatgtttcctgataacacatggaaatgaccaaaaaaaccagcggtagttaacta 8675560  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 224
Target Start/End: Complemental strand, 22555424 - 22555367
Alignment:
Q  168 caatgtttcctaataatacatggaaatga-tagaaaaatccaacggtagttaactacc 224  Q
    |||||||||||||||||||||||||||||  | |||||| || ||||||| |||||||    
T  22555424 caatgtttcctaataatacatggaaatgaccaaaaaaattcagcggtagtaaactacc 22555367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 227
Target Start/End: Complemental strand, 37701398 - 37701341
Alignment:
Q  171 tgtttcctaataatacatggaaatgat-agaaaaatccaacggtagttaactaccgtc 227  Q
    |||||| ||| ||||||||||||| || | |||||| |||||||||||||||||||||    
T  37701398 tgtttcttaaaaatacatggaaattatcaaaaaaattcaacggtagttaactaccgtc 37701341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 224
Target Start/End: Original strand, 18951033 - 18951077
Alignment:
Q  180 ataatacatggaaatgatagaaaaatccaacggtagttaactacc 224  Q
    |||||||||||||||||  |||||| |||||| ||||||||||||    
T  18951033 ataatacatggaaatgaccgaaaaacccaacgatagttaactacc 18951077  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 227
Target Start/End: Original strand, 29722743 - 29722798
Alignment:
Q  171 tgtttcctaataatacatggaaatgatagaaaaatccaacggtagttaactaccgtc 227  Q
    |||||||||  || |||||||||||||| ||||||| ||||||||||||||| ||||    
T  29722743 tgtttcctagaaacacatggaaatgata-aaaaatctaacggtagttaactatcgtc 29722798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 224
Target Start/End: Original strand, 50482322 - 50482366
Alignment:
Q  180 ataatacatggaaatgatagaaaaatccaacggtagttaactacc 224  Q
    ||||||||||||||||||| |||| |  |||||||||||||||||    
T  50482322 ataatacatggaaatgataaaaaagtttaacggtagttaactacc 50482366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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