View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19687_low_69 (Length: 223)
Name: NF19687_low_69
Description: NF19687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19687_low_69 |
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Alignment Details
Target: chr3 (Bit Score: 97; Significance: 8e-48; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 28 - 212
Target Start/End: Original strand, 1331175 - 1331352
Alignment:
| Q |
28 |
tcgttggttaatccctcggaaggttgtggaaaatgtagatcgtggtnnnnnnnnccc-gcatatgtttcaaagaaaacaattcataaatatgttgacaag |
126 |
Q |
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| T |
1331175 |
tcgttggttgatccctcggaagattgtggaaaatgtagatcatggtaaaaaaaaacctgcatatgtttcgaagaaaacaattcataaatatgttgacaag |
1331274 |
T |
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| Q |
127 |
gagaatacatacggcatagcatcctccaaggcttttgaagcgcgggtgcaacacttgttattactcatgttgaaaattttgttgat |
212 |
Q |
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|||||| ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |
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| T |
1331275 |
gagaatgcatacggcatagcatcctccaaggcttttgaagtgc--------cacttgttattactcatgttgaaaattttgttgat |
1331352 |
T |
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