View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19687_low_71 (Length: 212)
Name: NF19687_low_71
Description: NF19687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19687_low_71 |
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Alignment Details
Target: chr8 (Bit Score: 67; Significance: 6e-30; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 32335167 - 32335233
Alignment:
| Q |
19 |
atatgataaccattctaaatcagcagcttcttctacctacaaaaattgcaactttggttaaattctt |
85 |
Q |
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| T |
32335167 |
atatgataaccattctaaatcagcagcttcttctacctacaaaaattgcaactttggttaaattctt |
32335233 |
T |
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Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 150 - 195
Target Start/End: Original strand, 32335298 - 32335343
Alignment:
| Q |
150 |
aatgtaagaggaagagagagagtaccggaacggtgagttcggtagt |
195 |
Q |
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| T |
32335298 |
aatgtaagaggaagagagagagtaccggaacggtgagttcggtagt |
32335343 |
T |
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