View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19687_low_8 (Length: 539)
Name: NF19687_low_8
Description: NF19687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19687_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 120; Significance: 4e-61; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 16 - 170
Target Start/End: Complemental strand, 9181017 - 9180865
Alignment:
| Q |
16 |
aattgaacttctctcacaatgttaaatgtgtgtgagttttgccgctctatttataaaggtaaaggnnnnnnnnnnggaaattattatatgctaatcaatg |
115 |
Q |
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| T |
9181017 |
aattgaacttctctcacaatgttaaatgtgtgtgagttttgccgctctatttataaaggtaaaggaaaaaaaa--ggaaattattatatgctaatcaatg |
9180920 |
T |
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| Q |
116 |
cttagttctatttaataaatttcattatttctataaacacattgaacagtgtaac |
170 |
Q |
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| T |
9180919 |
cttagttctatttaataaatttcattatttctataaacacattgaacagtgtaac |
9180865 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 250 - 343
Target Start/End: Complemental strand, 9180785 - 9180692
Alignment:
| Q |
250 |
tcgttttcattgttgttgttgtgatgatcgctgaaattggatctgctgagagatgaattacatgaaataagaaaggatctgggtttatggaagc |
343 |
Q |
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| T |
9180785 |
tcgttttcattgttgttgttgtgatgatcgctgaaattggatctgctgagagatgaattacatgaaataagaaaggatctgggtttatggaagc |
9180692 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 419 - 496
Target Start/End: Complemental strand, 9180616 - 9180539
Alignment:
| Q |
419 |
tggcggcatttgtgtgatcggccgtgatggtggtggtagcgccggtgatcggttgcatggagaaacgagatcttatca |
496 |
Q |
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| T |
9180616 |
tggcggcatttgtgtgatcggccgtgatggtggtggtagcgccggtgatcggttgcatggagaaacgagatcttatca |
9180539 |
T |
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