View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19688_high_5 (Length: 252)
Name: NF19688_high_5
Description: NF19688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19688_high_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 87; Significance: 8e-42; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 15 - 105
Target Start/End: Complemental strand, 43799496 - 43799406
Alignment:
| Q |
15 |
tgagatgaagcacgattgttcccgaaaagagaatccctacgaagcccgaagaaatcaagaattttcttctgagaaagctctgtaacacatt |
105 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43799496 |
tgagaagaagcacgattgttcccgaaaagagaatccctacgaagcccgaagaaatcaagaattttcttctgagaaagctctgtaacacatt |
43799406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 190 - 231
Target Start/End: Complemental strand, 43799327 - 43799286
Alignment:
| Q |
190 |
acaatttcaatctcttacttttgagtttcttgaccttcacat |
231 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43799327 |
acaatttcaatctcttacttttgagtttcttgaccttcacat |
43799286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University