View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19688_low_1 (Length: 423)
Name: NF19688_low_1
Description: NF19688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19688_low_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 355
Target Start/End: Complemental strand, 43799931 - 43799589
Alignment:
| Q |
1 |
gcacaaacgggcaactacatttcataaggctaaaaaataattatccccaagccatacaagcatgctttgttcacacaaaaatttaaacaaaatccaaata |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
43799931 |
gcacaaacgggcaactacatttcataaggctaaaaaatacttatccccaagccatacaagcatgctttgttcacacaaaaatttaaacaaaatccaaa-a |
43799833 |
T |
|
| Q |
101 |
atcattacaagaattaattcatatctttaannnnnnnngacaattaattcaaatctctattaaatttgaaagaacaatctacaaaaaatattcataatcc |
200 |
Q |
| |
|
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43799832 |
at-----------ttaattcatatctttaattttttttgacaattaattcaaatctctattaaatttgaaagaacaatctacaaaaaatattcataatcc |
43799744 |
T |
|
| Q |
201 |
atgaatcatgattcaatgtacaataatttgttcacatatatcataaacaaaattcaatccacatcactttcacaaagccaaacaacaactgatcaaaaac |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43799743 |
atgaatcatgattcaatgtacaataatttgttcacatgtatcataaacaaaattcaatccacatcactttcacaaagccaaacaacaactgatcaaaaac |
43799644 |
T |
|
| Q |
301 |
ttgattaaaactaccaaatcaaatatccaaacattgcattgacaaaatgatcatc |
355 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43799643 |
ttgattaaaactaccaaatcaaatatccaaacattgcattgacaaaatgatcatc |
43799589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University