View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19688_low_6 (Length: 250)
Name: NF19688_low_6
Description: NF19688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19688_low_6 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 141; Significance: 5e-74; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 3218759 - 3218558
Alignment:
| Q |
1 |
aatcaacaaatgatatactaccatggtccatcctagttgagtttactttactaaattagttcataaatcatatctatgtaannnnnnnnnnnnnnnaggt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
3218759 |
aatcaacaaatgatatactaccatggtccatcctagttgagtttactttactaaattagttcataaatcatatctatgtaattttttatttgttttaggt |
3218660 |
T |
|
| Q |
101 |
agaacatctatttatacattagcatatgcttctttgatttgtttatatatgtacaagtggggaagttaaaaagaatgcattcagagcatgcaatgaataa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |||||||||||||| ||| |
|
|
| T |
3218659 |
agaacatctatttatacattagcatatgcttctttgatttgtttatacatgtacaagtggggaagttaaaaaaaatgcattaagagcatgcaatgagtaa |
3218560 |
T |
|
| Q |
201 |
aa |
202 |
Q |
| |
|
|| |
|
|
| T |
3218559 |
aa |
3218558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 111 - 240
Target Start/End: Complemental strand, 3236401 - 3236269
Alignment:
| Q |
111 |
tttatacattagcatatgcttctttgatttgtttatatatgtacaagtggggaagttaa---aaagaatgcattcagagcatgcaatgaataaaaaatta |
207 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |
|
|
| T |
3236401 |
tttatacattagcatatgcttctttcatttgtttatatatgtacaagtggggaagttaattaaaagaatgcattcagagcatgcaatgaataaaaaaata |
3236302 |
T |
|
| Q |
208 |
tataacatttggaatgtagctcatttccctatg |
240 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
3236301 |
tataacatttggaatgtagctcatttccctatg |
3236269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University