View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19688_low_7 (Length: 247)
Name: NF19688_low_7
Description: NF19688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19688_low_7 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 23 - 247
Target Start/End: Complemental strand, 3219097 - 3218873
Alignment:
| Q |
23 |
tgtacaatgaaaatgaaatctaatacccatccatttcaagacattaagccggattaaaggactttatcaaagagaactttggcaatatgaaagttgatgg |
122 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3219097 |
tgtacaatgaaaatgaaatctaatacccatccatttcaagacattaaactggattaaaggactttatcaaagagaactttggcaatatgaaagttgatgg |
3218998 |
T |
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| Q |
123 |
tctttgaatcacagaaagctgcatagtaaaaactccttgcaactgtaaagaaagtattcttgatattgaaatcaatgtcatttggagatttttggaacac |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
3218997 |
tctttgaatcacagaaagctgcatagtaaaaactccttgcaactgtaaagaaagtattcttgatattgaaatcaatatcatttggagatttttggaacac |
3218898 |
T |
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| Q |
223 |
caattctacaagttcttgcattttt |
247 |
Q |
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| T |
3218897 |
caattctacaagttcttgcattttt |
3218873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 51 - 247
Target Start/End: Complemental strand, 3236769 - 3236573
Alignment:
| Q |
51 |
atccatttcaagacattaagccggattaaaggactttatcaaagagaactttggcaatatgaaagttgatggtctttgaatcacagaaagctgcatagta |
150 |
Q |
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||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3236769 |
atccatttcaagacattaaactggattaaaggactttatcaaagagaactttggcaatatgaaagttgatggtctttgaatcacagaaagctgcatagta |
3236670 |
T |
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| Q |
151 |
aaaactccttgcaactgtaaagaaagtattcttgatattgaaatcaatgtcatttggagatttttggaacaccaattctacaagttcttgcattttt |
247 |
Q |
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| T |
3236669 |
aaaactccttgcaactgtaaagaaagtattcttgatattgaaatcaatatcatttggagatttttggaacaccaattctacaagttcttgcattttt |
3236573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 74 - 247
Target Start/End: Original strand, 3175271 - 3175444
Alignment:
| Q |
74 |
gattaaaggactttatcaaagagaactttggcaatatgaaagttgatggtctttgaatcacagaaagctgcatagtaaaaactccttgcaactgtaaaga |
173 |
Q |
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||||||| ||||||||||| ||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |||||||||| || | |
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| T |
3175271 |
gattaaacaactttatcaaacagaactttggcaatatgaaagttgatggttctagaatcacagaaagctgcatagtaaaaactctttgcaactgtgaaaa |
3175370 |
T |
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| Q |
174 |
aagtattcttgatattgaaatcaatgtcatttggagatttttggaacaccaattctacaagttcttgcattttt |
247 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
3175371 |
aagtattcttgatattgaaatcaatgtcatttggagattgttggaacaccaattctacaagttcttgcattttt |
3175444 |
T |
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