View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19688_low_8 (Length: 236)
Name: NF19688_low_8
Description: NF19688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19688_low_8 |
 |  |
|
| [»] chr7 (15 HSPs) |
 |  |
|
| [»] scaffold0027 (1 HSPs) |
 |  |  |
|
Alignment Details
Target: chr7 (Bit Score: 186; Significance: 1e-101; HSPs: 15)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 15 - 236
Target Start/End: Complemental strand, 20229500 - 20229279
Alignment:
| Q |
15 |
tcagatactgtgacaatcccattataatcattcagtggtttgtttctgttagccacccatatgattgtagattgagacttccaccaaattccaatgtagc |
114 |
Q |
| |
|
||||||| |||||||||||||||| ||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
20229500 |
tcagatattgtgacaatcccattagaatcattcagtggtttgtttctgtttgcaacccatatgattgtagattgagacttccaccaaattccaacgtagc |
20229401 |
T |
 |
| Q |
115 |
ggtttgtagaatttttagggctaaagaatccaaaggtgaagttgccatctttggagattagagtttcaggatccttgataaatcgagatgatgtgatggt |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || ||||||||| |||||||||||||||| |
|
|
| T |
20229400 |
ggtttgtagaatttttagggctaaagaatccaaaggtgaagttaccatctttggagattagagtttcagggtctttgataaattgagatgatgtgatggt |
20229301 |
T |
 |
| Q |
215 |
gtctataccaacactaacatgt |
236 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
20229300 |
gtctataccaacactaacatgt |
20229279 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 10 - 236
Target Start/End: Original strand, 20170278 - 20170504
Alignment:
| Q |
10 |
catcatcagatactgtgacaatcccattataatcattcagtggtttgtttctgttagccacccatatgattgtagattgagacttccaccaaattccaat |
109 |
Q |
| |
|
|||| ||| ||| |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20170278 |
catcttcaaatattgtgacaatcccattagaatcattcagtggttagtttctgttagccacccatatgattgtagattgagacttccaccaaattccaac |
20170377 |
T |
 |
| Q |
110 |
gtagcggtttgtagaatttttagggctaaagaatccaaaggtgaagttgccatctttggagattagagtttcaggatccttgataaatcgagatgatgtg |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| || ||||||||| ||||||||||| |
|
|
| T |
20170378 |
gtagcggtttgtagaatttttagggctaaagaatccaaaggtgaagttaccgtctttggagattagagtttcagggtctttgataaattgagatgatgtg |
20170477 |
T |
 |
| Q |
210 |
atggtgtctataccaacactaacatgt |
236 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
20170478 |
atggtgtctataccaacactaacatgt |
20170504 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 10 - 236
Target Start/End: Original strand, 20172271 - 20172497
Alignment:
| Q |
10 |
catcatcagatactgtgacaatcccattataatcattcagtggtttgtttctgttagccacccatatgattgtagattgagacttccaccaaattccaat |
109 |
Q |
| |
|
|||| ||| ||| |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20172271 |
catcttcaaatattgtgacaatcccattagaatcattcagtggttagtttctgttagccacccatatgattgtagattgagacttccaccaaattccaac |
20172370 |
T |
 |
| Q |
110 |
gtagcggtttgtagaatttttagggctaaagaatccaaaggtgaagttgccatctttggagattagagtttcaggatccttgataaatcgagatgatgtg |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| || ||||||||| ||||||||||| |
|
|
| T |
20172371 |
gtagcggtttgtagaatttttagggctaaagaatccaaaggtgaagttaccgtctttggagattagagtttcagggtctttgataaattgagatgatgtg |
20172470 |
T |
 |
| Q |
210 |
atggtgtctataccaacactaacatgt |
236 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
20172471 |
atggtgtctataccaacactaacatgt |
20172497 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 15 - 236
Target Start/End: Complemental strand, 20262083 - 20261862
Alignment:
| Q |
15 |
tcagatactgtgacaatcccattataatcattcagtggtttgtttctgttagccacccatatgattgtagattgagacttccaccaaattccaatgtagc |
114 |
Q |
| |
|
||||||| |||||||||||||||| ||||||||||| ||||||||||||| || |||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
20262083 |
tcagatattgtgacaatcccattagaatcattcagtagtttgtttctgtttgcaacccatatgattgtagattgagacttccaccaaattccaacgtagc |
20261984 |
T |
 |
| Q |
115 |
ggtttgtagaatttttagggctaaagaatccaaaggtgaagttgccatctttggagattagagtttcaggatccttgataaatcgagatgatgtgatggt |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || ||||||||| |||||||||||||||| |
|
|
| T |
20261983 |
ggtttgtagaatttttagggctaaagaatccaaaggtgaagttaccatctttggagattagagtttcagggtctttgataaattgagatgatgtgatggt |
20261884 |
T |
 |
| Q |
215 |
gtctataccaacactaacatgt |
236 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
20261883 |
gtctataccaacactaacatgt |
20261862 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 10 - 234
Target Start/End: Complemental strand, 20271657 - 20271433
Alignment:
| Q |
10 |
catcatcagatactgtgacaatcccattataatcattcagtggtttgtttctgttagccacccatatgattgtagattgagacttccaccaaattccaat |
109 |
Q |
| |
|
|||| ||||||| |||||||||||||||| |||||||| ||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
20271657 |
catcttcagatattgtgacaatcccattagtatcattcaatggttggtttctgtttgccacccatatgatagtagattgagacttccaccaaattccaac |
20271558 |
T |
 |
| Q |
110 |
gtagcggtttgtagaatttttagggctaaagaatccaaaggtgaagttgccatctttggagattagagtttcaggatccttgataaatcgagatgatgtg |
209 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||| |||||| |||||| || |||||| || ||||||||||| |
|
|
| T |
20271557 |
atagcggtttgtagaatttttagcactaaagaatcccaaggtgaagttaccatctttggaggttagagcttcagggtctttgatatattgagatgatgtg |
20271458 |
T |
 |
| Q |
210 |
atggtgtctataccaacactaacat |
234 |
Q |
| |
|
||||||| | |||||| |||||||| |
|
|
| T |
20271457 |
atggtgtttgtaccaatactaacat |
20271433 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 10 - 182
Target Start/End: Complemental strand, 20241455 - 20241283
Alignment:
| Q |
10 |
catcatcagatactgtgacaatcccattataatcattcagtggtttgtttctgttagccacccatatgattgtagattgagacttccaccaaattccaat |
109 |
Q |
| |
|
|||| ||||||| ||||||||||||||| | ||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20241455 |
catcttcagatatcgtgacaatcccattagagtcattcagtggttggtttctgtttgccacccatatgattgtagattgagacttccaccaaattccaac |
20241356 |
T |
 |
| Q |
110 |
gtagcggtttgtagaatttttagggctaaagaatccaaaggtgaagttgccatctttggagattagagtttca |
182 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||| |
|
|
| T |
20241355 |
gtagcggtttgtagaatttttagggctaaagaatccaaaagtgaagttaccgtctttggagattagagtttca |
20241283 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 31 - 216
Target Start/End: Complemental strand, 20292443 - 20292258
Alignment:
| Q |
31 |
tcccattataatcattcagtggtttgtttctgttagccacccatatgattgtagattgagacttccaccaaattccaatgtagcggtttgtagaattttt |
130 |
Q |
| |
|
|||||||| ||||||||||||||| ||||||||| |||||||||||||||||||| |||||||||||||||||||||| |||||| |||||||| ||||| |
|
|
| T |
20292443 |
tcccattagaatcattcagtggttggtttctgttcgccacccatatgattgtagactgagacttccaccaaattccaacgtagcgatttgtagagttttt |
20292344 |
T |
 |
| Q |
131 |
agggctaaagaatccaaaggtgaagttgccatctttggagattagagtttcaggatccttgataaatcgagatgatgtgatggtgt |
216 |
Q |
| |
|
||| ||||||||||||||||||||||| |||||||||||||| |||||||||| |||||||| ||| | |||||||||||||||| |
|
|
| T |
20292343 |
aggactaaagaatccaaaggtgaagttaccatctttggagataagagtttcagcgtccttgatgaattgggatgatgtgatggtgt |
20292258 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 10 - 213
Target Start/End: Complemental strand, 20287093 - 20286890
Alignment:
| Q |
10 |
catcatcagatactgtgacaatcccattataatcattcagtggtttgtttctgttagccacccatatgattgtagattgagacttccaccaaattccaat |
109 |
Q |
| |
|
|||| ||||||| |||||||||||||||| ||||| | ||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
20287093 |
catcctcagatattgtgacaatcccattagaatcacttagtggtttgtttctgtttgccacccatatgattgaagattgagacttccaccaaattccaac |
20286994 |
T |
 |
| Q |
110 |
gtagcggtttgtagaatttttagggctaaagaatccaaaggtgaagttgccatctttggagattagagtttcaggatccttgataaatcgagatgatgtg |
209 |
Q |
| |
|
||||| |||||||| ||||||||||||||||||||||||||||| || ||||||||||||| ||||||| |||| || ||||| ||| | ||||||||| |
|
|
| T |
20286993 |
atagcgatttgtagagtttttagggctaaagaatccaaaggtgaaattaccatctttggagagtagagttccagggtctttgatgaattgggatgatgtg |
20286894 |
T |
 |
| Q |
210 |
atgg |
213 |
Q |
| |
|
|||| |
|
|
| T |
20286893 |
atgg |
20286890 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 18 - 236
Target Start/End: Complemental strand, 20281963 - 20281745
Alignment:
| Q |
18 |
gatactgtgacaatcccattataatcattcagtggtttgtttctgttagccacccatatgattgtagattgagacttccaccaaattccaatgtagcggt |
117 |
Q |
| |
|
|||| ||||| | |||||||| ||||||||||||| | ||||||||| ||||||| |||||||||||||||||||||||||||||||||| | ||| | |
|
|
| T |
20281963 |
gatattgtgaaattcccattagaatcattcagtggctggtttctgttttccacccacatgattgtagattgagacttccaccaaattccaacattgcgat |
20281864 |
T |
 |
| Q |
118 |
ttgtagaatttttagggctaaagaatccaaaggtgaagttgccatctttggagattagagtttcaggatccttgataaatcgagatgatgtgatggtgtc |
217 |
Q |
| |
|
||||||||||| || ||||||||||||| ||||||||||| |||||||||||||||||||||||||| || ||||||||| |||||||||| || ||||| |
|
|
| T |
20281863 |
ttgtagaatttctacggctaaagaatcccaaggtgaagttaccatctttggagattagagtttcagggtctttgataaattgagatgatgttatagtgtc |
20281764 |
T |
 |
| Q |
218 |
tataccaacactaacatgt |
236 |
Q |
| |
|
|| ||||| |||||||||| |
|
|
| T |
20281763 |
tacaccaatactaacatgt |
20281745 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 18 - 233
Target Start/End: Complemental strand, 20301658 - 20301443
Alignment:
| Q |
18 |
gatactgtgacaatcccattataatcattcagtggtttgtttctgttagccacccatatgattgtagattgagacttccaccaaattccaatgtagcggt |
117 |
Q |
| |
|
|||| |||||||||||||||| ||||||||||||||| |||||||||||||||||||| || |||||| |||| |||||||||||||||| |||||| | |
|
|
| T |
20301658 |
gatattgtgacaatcccattagaatcattcagtggttggtttctgttagccacccatacgactgtagaacgagaattccaccaaattccaacgtagcgat |
20301559 |
T |
 |
| Q |
118 |
ttgtagaatttttagggctaaagaatccaaaggtgaagttgccatctttggagattagagtttcaggatccttgataaatcgagatgatgtgatggtgtc |
217 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| || ||||||||||| | |||||||||||| |||||||| ||| | ||||||||||||||||| |
|
|
| T |
20301558 |
ttgtagaattttcagggctaaagaatccaaaggcataggaaccatctttggaaagtagagtttcagggtccttgatgaattgggatgatgtgatggtgtc |
20301459 |
T |
 |
| Q |
218 |
tataccaacactaaca |
233 |
Q |
| |
|
|||||| | ||||||| |
|
|
| T |
20301458 |
tataccgatactaaca |
20301443 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 25 - 184
Target Start/End: Original strand, 20092321 - 20092480
Alignment:
| Q |
25 |
tgacaatcccattataatcattcagtggtttgtttctgttagccacccatatgattgtagattgagacttccaccaaattccaatgtagcggtttgtaga |
124 |
Q |
| |
|
|||||||||||||| ||||||||||||||| ||||||||| ||||||||||||| | ||||||||||||||||||||||||||| |||||| ||||||| |
|
|
| T |
20092321 |
tgacaatcccattagaatcattcagtggttggtttctgtttgccacccatatgaatctagattgagacttccaccaaattccaacgtagcgacttgtaga |
20092420 |
T |
 |
| Q |
125 |
atttttagggctaaagaatccaaaggtgaagttgccatctttggagattagagtttcagg |
184 |
Q |
| |
|
||| |||||||||||||||||||||||||||| ||| |||||||||||||| ||||||| |
|
|
| T |
20092421 |
gtttgtagggctaaagaatccaaaggtgaagttaccacctttggagattagattttcagg |
20092480 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 10 - 220
Target Start/End: Complemental strand, 20296890 - 20296680
Alignment:
| Q |
10 |
catcatcagatactgtgacaatcccattataatcattcagtggtttgtttctgttagccacccatatgattgtagattgagacttccaccaaattccaat |
109 |
Q |
| |
|
|||| ||||||| |||||||||||||||| |||||||||||| || |||| ||||||||||||||| || ||||| ||||||||||||||||||||| |
|
|
| T |
20296890 |
catcttcagatattgtgacaatcccattagaatcattcagtgattggtttttgttagccacccatacgactgtagtgcgagacttccaccaaattccaac |
20296791 |
T |
 |
| Q |
110 |
gtagcggtttgtagaatttttagggctaaagaatccaaaggtgaagttgccatctttggagattagagtttcaggatccttgataaatcgagatgatgtg |
209 |
Q |
| |
|
||||| |||||||| ||| |||| |||||| |||||||||||||||| |||||||| ||||||||||||||||| |||||||| ||| | || ||||| |
|
|
| T |
20296790 |
atagcgatttgtagagtttataggactaaagcatccaaaggtgaagttaccatcttttgagattagagtttcagggtccttgatgaattgggaagatgtt |
20296691 |
T |
 |
| Q |
210 |
atggtgtctat |
220 |
Q |
| |
|
|| |||||||| |
|
|
| T |
20296690 |
atagtgtctat |
20296680 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 10 - 236
Target Start/End: Original strand, 20064740 - 20064966
Alignment:
| Q |
10 |
catcatcagatactgtgacaatcccattataatcattcagtggtttgtttctgttagccacccatatgattgtagattgagacttccaccaaattccaat |
109 |
Q |
| |
|
|||| ||||||| |||| | |||||||| ||||||| | ||||| ||||||||| ||||||||||||| |||||| |||| ||||||||||||||| |
|
|
| T |
20064740 |
catcttcagatatggtgatagtcccattagaatcatttattggttggtttctgtttgccacccatatgactgtagaacgagaattccaccaaattccagc |
20064839 |
T |
 |
| Q |
110 |
gtagcggtttgtagaatttttagggctaaagaatccaaaggtgaagttgccatctttggagattagagtttcaggatccttgataaatcgagatgatgtg |
209 |
Q |
| |
|
|||||| ||| |||||||| |||||||||||||||||||| || ||||||||||||| ||| |||||||| |||||||| ||| | ||||||||| |
|
|
| T |
20064840 |
gtagcgatttatagaatttccagggctaaagaatccaaaggcataggaaccatctttggagagtagtgtttcagggtccttgatgaattgggatgatgtg |
20064939 |
T |
 |
| Q |
210 |
atggtgtctataccaacactaacatgt |
236 |
Q |
| |
|
|||||||||||||| | |||||||||| |
|
|
| T |
20064940 |
atggtgtctataccgatactaacatgt |
20064966 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #14
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 59 - 234
Target Start/End: Complemental strand, 19936806 - 19936631
Alignment:
| Q |
59 |
tctgttagccacccatatgattgtagattgagacttccaccaaattccaatgtagcggtttgtagaatttttagggctaaagaatccaaaggtgaagttg |
158 |
Q |
| |
|
||||||| |||||||| |||||| | |||| || |||||||||||||| || || || |||||||||| ||| ||||| || || ||||||||||| |
|
|
| T |
19936806 |
tctgttaagcacccataggattgtgaaatgaggctgccaccaaattccaacataacgattcgtagaattttcaggactaaaaaagcctaaggtgaagtta |
19936707 |
T |
 |
| Q |
159 |
ccatctttggagattagagtttcaggatccttgataaatcgagatgatgtgatggtgtctataccaacactaacat |
234 |
Q |
| |
|
||| |||||| ||||||||||||| ||||||||||| ||| |||||| ||||||||||| || ||||||||| |
|
|
| T |
19936706 |
ccactcttggagcttagagtttcagggtccttgataaactgagttgatgtaatggtgtctatggcatcactaacat |
19936631 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #15
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 59 - 234
Target Start/End: Complemental strand, 19967945 - 19967770
Alignment:
| Q |
59 |
tctgttagccacccatatgattgtagattgagacttccaccaaattccaatgtagcggtttgtagaatttttagggctaaagaatccaaaggtgaagttg |
158 |
Q |
| |
|
||||||| |||||||| |||||| | |||| || |||||||||||||| || || || |||||||||| ||| ||||| || || ||||||||||| |
|
|
| T |
19967945 |
tctgttaagcacccataggattgtgaaatgaggctgccaccaaattccaacataacgattcgtagaattttcaggactaaaaaagcctaaggtgaagtta |
19967846 |
T |
 |
| Q |
159 |
ccatctttggagattagagtttcaggatccttgataaatcgagatgatgtgatggtgtctataccaacactaacat |
234 |
Q |
| |
|
||| |||||| ||||||||||||| ||||||||||| ||| |||||| ||||||||||| || ||||||||| |
|
|
| T |
19967845 |
ccactcttggagcttagagtttcagggtccttgataaactgagttgatgtaatggtgtctatggcatcactaacat |
19967770 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 132; Significance: 1e-68; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 29 - 220
Target Start/End: Original strand, 40826067 - 40826258
Alignment:
| Q |
29 |
aatcccattataatcattcagtggtttgtttctgttagccacccatatgattgtagattgagacttccaccaaattccaatgtagcggtttgtagaattt |
128 |
Q |
| |
|
|||||||||| |||||||||||| | ||||||||| |||||||||||||||||||| |||||||||||||||||||||| |||||| ||||||||||| |
|
|
| T |
40826067 |
aatcccattagaatcattcagtgatcggtttctgtttgccacccatatgattgtagactgagacttccaccaaattccaacgtagcgatttgtagaattc |
40826166 |
T |
 |
| Q |
129 |
ttagggctaaagaatccaaaggtgaagttgccatctttggagattagagtttcaggatccttgataaatcgagatgatgtgatggtgtctat |
220 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||||||||||| |||||||||||| |||||||| ||| |||||||||||||||||||||| |
|
|
| T |
40826167 |
ttagggctaaagaatcccaaggtgaagttaccatctttggagagtagagtttcagggtccttgatgaattgagatgatgtgatggtgtctat |
40826258 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 10 - 183
Target Start/End: Original strand, 40821378 - 40821537
Alignment:
| Q |
10 |
catcatcagatactgtgacaatcccattataatcattcagtggtttgtttctgtta-gccacccatatgattgtagattgagacttccaccaaattccaa |
108 |
Q |
| |
|
|||| ||||||| ||||||| |||||||| |||| |||||||||| ||||||||| ||||||||||||||||||| |||||||| ||||||||||||| |
|
|
| T |
40821378 |
catcttcagatattgtgacagtcccattagaatcgttcagtggttggtttctgttttgccacccatatgattgtaggctgagacttgcaccaaattccaa |
40821477 |
T |
 |
| Q |
109 |
tgtagcggtttgtagaatttttagggctaaagaatccaaaggtgaagttgccatctttggagattagagtttcag |
183 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |
|
|
| T |
40821478 |
---------------aatttttagggctaaagaatccaaaggtgaagttaccatctttggagataagagtttcag |
40821537 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0027 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0027
Description:
Target: scaffold0027; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 10 - 180
Target Start/End: Original strand, 135332 - 135502
Alignment:
| Q |
10 |
catcatcagatactgtgacaatcccattataatcattcagtggtttgtttctgttagccacccatatgattgtagattgagacttccaccaaattccaat |
109 |
Q |
| |
|
|||| ||| ||| |||||||||| |||| |||||| | ||||| ||| |||| |||| |||||||||||||| | |||||||| ||| ||||||| |
|
|
| T |
135332 |
catcttcaaatattgtgacaatctcattcgaatcatcaaatggttgatttatgttttccactcatatgattgtagaataagacttccgtcaagttccaat |
135431 |
T |
 |
| Q |
110 |
gtagcggtttgtagaatttttagggctaaagaatccaaaggtgaagttgccatctttggagattagagttt |
180 |
Q |
| |
|
|||||| |||||||| ||||| |||| ||||||||||| || | || |||||||| ||||||||||||| |
|
|
| T |
135432 |
gtagcgatttgtagatcttttaaagctagagaatccaaagttggatttaccatctttcgagattagagttt |
135502 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University