View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19688_low_9 (Length: 233)
Name: NF19688_low_9
Description: NF19688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19688_low_9 |
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| [»] scaffold0267 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 33639980 - 33639765
Alignment:
| Q |
1 |
agaggaatgttttgctgaagcttctcgttaggtgatctcacaatgtctcttcccgttcttcttcctgatctcattgtggaaa-catatcatggcttccgt |
99 |
Q |
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| T |
33639980 |
agaggaatgttttgctgaagcttctcgttaggtgatctcacaatgtctcttcccgttcttcttcctgatctcagtgtggaaatcatatcatggcttccgt |
33639881 |
T |
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| Q |
100 |
tgaagcccgtcgtgagattcaaatgtgtttctaaacactatcaatcaatcatttccgacccaaaatttgcaaaacttcaccttcaaagatcacctaaaaa |
199 |
Q |
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| T |
33639880 |
tgaagcccgtcgtgagattcaaatgtgtttctaaacactaccaatcaatcatttccgacccaaaatttgcaaaacttcaccttcaaagatcacctaaaaa |
33639781 |
T |
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| Q |
200 |
tccacacaccctactt |
215 |
Q |
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| T |
33639780 |
tccacacaccctactt |
33639765 |
T |
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Target: chr3 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 114 - 212
Target Start/End: Original strand, 3836138 - 3836236
Alignment:
| Q |
114 |
agattcaaatgtgtttctaaacactatcaatcaatcatttccgacccaaaatttgcaaaacttcaccttcaaagatcacctaaaaatccacacacccta |
212 |
Q |
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| T |
3836138 |
agattcaaatgtgtatccaaacactataattcactcatttccgaccctgaattcacaaaacttcaccttcaaagattacctaaaatttcacacacccta |
3836236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0267 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0267
Description:
Target: scaffold0267; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 113 - 212
Target Start/End: Original strand, 11646 - 11745
Alignment:
| Q |
113 |
gagattcaaatgtgtttctaaacactatcaatcaatcatttccgacccaaaatttgcaaaacttcaccttcaaagatcacctaaaaatccacacacccta |
212 |
Q |
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| T |
11646 |
gagattcaaatgtgtatccaaacactataattcactcatttccaaccctgaattcacaaaacttcaccttcaaagattacctaaaatttcacacacccta |
11745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 168 - 215
Target Start/End: Complemental strand, 20477714 - 20477667
Alignment:
| Q |
168 |
gcaaaacttcaccttcaaagatcacctaaaaatccacacaccctactt |
215 |
Q |
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| T |
20477714 |
gcaaaacttcaccttcaaagatcacccaaacatacacacaccctactt |
20477667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 199
Target Start/End: Original strand, 1080349 - 1080389
Alignment:
| Q |
159 |
ccaaaatttgcaaaacttcaccttcaaagatcacctaaaaa |
199 |
Q |
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| T |
1080349 |
ccaacatttgcagaacttcaccttcaaagatcacctaaaaa |
1080389 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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