View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19689_high_11 (Length: 303)
Name: NF19689_high_11
Description: NF19689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19689_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 10 - 287
Target Start/End: Complemental strand, 41818760 - 41818463
Alignment:
| Q |
10 |
aagaatatgacatgaaatatgggatcaaattggtgtttgtaatcatgcaacaaataaggcaacacaagtaacctatactgaaaacaattttacatgtacg |
109 |
Q |
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| T |
41818760 |
aagaaaatgacatgaaatatgggatcaaattggtgtttgtaatcatgcaacaaataaggcaacacaagtaacctatactgaaaacaattttacatgtacg |
41818661 |
T |
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| Q |
110 |
gatttcttttctttttt-gggtaacaagagaatcttagccca-------------------cattaaacaacaactggtcattttcatgtaccaatttat |
189 |
Q |
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| T |
41818660 |
gatttcttttctttttttgggtaacaagagaatcttagcccaaaagacaaaattacataaacattaaacaacaactggtcattttcatgtaccaatttat |
41818561 |
T |
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| Q |
190 |
ttttataatataaacttttggatattaacggcagaattttactcttttaaagctgagaggacaatttcctcaatttctcttctctatcgcgcaatatt |
287 |
Q |
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| T |
41818560 |
ttttataatataaacttttggatattaacggcagaattttactcttttaaagctgagaggacaatttcctcaatttctcttctctatcgcgcaatatt |
41818463 |
T |
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