View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19689_high_3 (Length: 677)
Name: NF19689_high_3
Description: NF19689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19689_high_3 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
| [»] scaffold0205 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 632; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 632; E-Value: 0
Query Start/End: Original strand, 15 - 677
Target Start/End: Original strand, 27296340 - 27297002
Alignment:
| Q |
15 |
catcatggaccaagactccattacagttgtcaaacttgagatggcattgtggactattttgaattgttatgcctgtgactgttggattaatacttccata |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27296340 |
catcatggaccaagactccattacagttgtcaaacttgagatggcattgtggactattttgaattgttatgcctgtgactgttggattaatacttccata |
27296439 |
T |
|
| Q |
115 |
gaaccttattgcctgttacagaaacatgtattagcttcattatgttcctaaatctccttaacataaatcaaatttggtgttgaaaaaggtttaaaatgtt |
214 |
Q |
| |
|
||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27296440 |
gaaccttatagcctgt-acagaaacatgtattagcttcattatgttcctaaatctccttaacataaatcaaatttggtgttgaaaaaggtttaaaatgtt |
27296538 |
T |
|
| Q |
215 |
actcacagttggtttgatgcttggcatttttcctcccagtgaactttcaatctagtacaatcgcaaaggt-taaatgattagcttaatgtgaacaacaaa |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
27296539 |
actcacagttggtttgatgcttggcatttttcctcccagtgaactttcaatctagtacaatcgcaaaggtataaatgattagcttaatgtgaacaacaaa |
27296638 |
T |
|
| Q |
314 |
atttctacggaaaaataggcgtgtatggtgcccgacatgtgtcagtgtctaatattgacatgacacggacacatgtggttacatttcatcccttctattg |
413 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27296639 |
atttctatggaaaaataggcgtgtatggtgcccgacatgtgtcactgtctaatattgacatgacacggacacatgtggttacatttcatcccttctattg |
27296738 |
T |
|
| Q |
414 |
tcttaaactattactagtgtctatgtgttgctatcaacgtcacatttgtgtttgtgtctgcgtttcatagtgtgtatgaaatatcgactactgataattg |
513 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27296739 |
tcttaaactattactagtgtctatgtgttgctatcaacgtcacatttgtgtttgtgtctgcgtttcatagtgtgtatgaaatatcgactactgataattg |
27296838 |
T |
|
| Q |
514 |
ttgatattacttgttttatactctaaaatgaattgatcactttcgaggagataaatccgcgaaattgcatggtaaaaatggaaattacctgcattggtgg |
613 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
27296839 |
ttgatattacttgttttatactctaaaatgaattgatcactttcgaggagataaatccgcgaaattgcatggtaaaaatgaaaattacctgcattggtgg |
27296938 |
T |
|
| Q |
614 |
gctcacaattgtgttgtttaaaggtaccaagagtttttcctcatcatctaaaggatcattatac |
677 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27296939 |
gctcacaattgtgttgtttaaaggtaccaagagtttttcctcatcatctaaaggatcattatac |
27297002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000003; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 348 - 398
Target Start/End: Complemental strand, 24047956 - 24047906
Alignment:
| Q |
348 |
acatgtgtcagtgtctaatattgacatgacacggacacatgtggttacatt |
398 |
Q |
| |
|
|||||| |||||||||||||||||||||||| ||||||||| |||||||| |
|
|
| T |
24047956 |
acatgtttcagtgtctaatattgacatgacaacgacacatgtagttacatt |
24047906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 100
Target Start/End: Complemental strand, 14737723 - 14737638
Alignment:
| Q |
15 |
catcatggaccaagactccattacagttgtcaaacttgagatggcattgtggactattttgaattgttatgcctgtgactgttgga |
100 |
Q |
| |
|
||||||| || | ||| ||||| || ||||||||||| ||||| || || |||||||| ||||||||||| || ||||| |||||| |
|
|
| T |
14737723 |
catcatgaacaaggaccccattgcaattgtcaaactttagatgacactgaggactattctgaattgttatacccgtgacagttgga |
14737638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 359 - 399
Target Start/End: Complemental strand, 29163452 - 29163412
Alignment:
| Q |
359 |
tgtctaatattgacatgacacggacacatgtggttacattt |
399 |
Q |
| |
|
|||||| |||||||| |||||||||||||||| |||||||| |
|
|
| T |
29163452 |
tgtctactattgacaagacacggacacatgtgattacattt |
29163412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0205 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0205
Description:
Target: scaffold0205; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 346 - 398
Target Start/End: Complemental strand, 21503 - 21451
Alignment:
| Q |
346 |
cgacatgtgtcagtgtctaatattgacatgacacggacacatgtggttacatt |
398 |
Q |
| |
|
||||| |||||||||| ||||||||||| |||| || ||||||||||||||| |
|
|
| T |
21503 |
cgacacgtgtcagtgtttaatattgacacaacactgatacatgtggttacatt |
21451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University