View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19689_low_1 (Length: 867)
Name: NF19689_low_1
Description: NF19689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19689_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 131; Significance: 2e-67; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 20 - 190
Target Start/End: Original strand, 55817280 - 55817450
Alignment:
| Q |
20 |
ttagaggagttatgagagaatcaattgctctcccaaatccttcaaagtatgaactctctcctcctaaatgactatatcaaattagcctttgcacaccaac |
119 |
Q |
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| T |
55817280 |
ttagaggaggtatgagagaatcaattgctctcccaaatccttaaaggaatgaactctctcctcccaaatgactgtgtcaaattagcctttgcacaccaac |
55817379 |
T |
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| Q |
120 |
atctcatgtatcctaattcattaaaaacaaacctttttcccaataacactaaattaaaaaacaaagatgaa |
190 |
Q |
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| T |
55817380 |
atctcatgtatcctaattcattagatacaaaccttttttccaataacactaaattaaaaaacaaagatgaa |
55817450 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 129; Significance: 3e-66; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 129; E-Value: 3e-66
Query Start/End: Original strand, 18 - 166
Target Start/End: Complemental strand, 11900670 - 11900522
Alignment:
| Q |
18 |
agttagaggagttatgagagaatcaattgctctcccaaatccttcaaagtatgaactctctcctcctaaatgactatatcaaattagcctttgcacacca |
117 |
Q |
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| T |
11900670 |
agttagaggaggtatgagagaatcaattgctctcccaaatccttaaaagtatgaactctctcctcccaaatgactatgtcaaattagcctttgcacacca |
11900571 |
T |
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| Q |
118 |
acatctcatgtatcctaattcattaaaaacaaacctttttcccaataac |
166 |
Q |
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| T |
11900570 |
acatctcatgtatcctaattcattaaatacaaacctttttcccaataac |
11900522 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 175 - 222
Target Start/End: Complemental strand, 40165612 - 40165565
Alignment:
| Q |
175 |
aaaaaacaaagatgaagaaggaacaaagagtaaataacatggagatga |
222 |
Q |
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| T |
40165612 |
aaaaaacaaagatgaagaagaaacaaagagtaaacaatatggagatga |
40165565 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000003; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 795 - 837
Target Start/End: Original strand, 45638665 - 45638707
Alignment:
| Q |
795 |
atgtctgtagtgcttgtacaaagatgatgataatttaaacaca |
837 |
Q |
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| T |
45638665 |
atgtctgcagcgcttgtacaaagatgatgataatttaaacaca |
45638707 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 471 - 513
Target Start/End: Original strand, 22407857 - 22407899
Alignment:
| Q |
471 |
tgaacctacaatgctacaatagattaaggtggaagacttgaat |
513 |
Q |
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| T |
22407857 |
tgaacctacaatgctacaataggttaaggtagaagacatgaat |
22407899 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 222
Target Start/End: Original strand, 45455627 - 45455672
Alignment:
| Q |
177 |
aaaacaaagatgaagaaggaacaaagagtaaataacatggagatga |
222 |
Q |
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| T |
45455627 |
aaaacaaagatgaagaagaaacaaagaataaacaatatggagatga |
45455672 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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