View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19689_low_10 (Length: 344)
Name: NF19689_low_10
Description: NF19689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19689_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 130; Significance: 3e-67; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 15 - 144
Target Start/End: Original strand, 16758861 - 16758990
Alignment:
| Q |
15 |
aactatagcattttaattgcttctttaataatatatttaatccatgtatgatgtatatttatttcacgacaatcttttcctaacaaacttgtgcatttca |
114 |
Q |
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| T |
16758861 |
aactatagcattttaattgcttctttaataatatatttaatccatgtatgatgtatatttatttcacgacaatcttttcctaacaaacttgtgcatttca |
16758960 |
T |
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| Q |
115 |
gtgaaaccaaatgcttgtcttgcctaaact |
144 |
Q |
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| T |
16758961 |
gtgaaaccaaatgcttgtcttgcctaaact |
16758990 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 220 - 334
Target Start/End: Original strand, 16759071 - 16759185
Alignment:
| Q |
220 |
ttatcttccatccatctatgcttgagagtgtatacttgtgaaatcagacatagcaaacttcatttctctttcacttgttaaaaagatttgttaagctcaa |
319 |
Q |
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| T |
16759071 |
ttatcttccatccatctatgcttgagagtgtatacttgtgaaatcagacatagcaaacttcatttctctttcacttgttaaaaagatttgttaagctcaa |
16759170 |
T |
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| Q |
320 |
gtagaacatagtata |
334 |
Q |
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| T |
16759171 |
gtagaacatagtata |
16759185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 220 - 334
Target Start/End: Original strand, 16753829 - 16753939
Alignment:
| Q |
220 |
ttatcttccatccatctatgcttgagagtgtatacttgtgaaatcagacatagcaaacttcatttctctttcacttgttaaaaagatttgttaagctcaa |
319 |
Q |
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| T |
16753829 |
ttatcttccatccatct-tgtttgagagtgta-acttgtgaattcacatatagcaaacttcatttctct--cacttgttaaaaagatttgttaagctcaa |
16753924 |
T |
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| Q |
320 |
gtagaacatagtata |
334 |
Q |
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| T |
16753925 |
gaagatcatagtata |
16753939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 168 - 201
Target Start/End: Original strand, 16759020 - 16759053
Alignment:
| Q |
168 |
ttgtgctactgcaaactttatttctcttctgcct |
201 |
Q |
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| T |
16759020 |
ttgtgctactgcaaactttatttctcttctgcct |
16759053 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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