View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19689_low_11 (Length: 303)

Name: NF19689_low_11
Description: NF19689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19689_low_11
NF19689_low_11
[»] chr2 (1 HSPs)
chr2 (10-287)||(41818463-41818760)


Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 10 - 287
Target Start/End: Complemental strand, 41818760 - 41818463
Alignment:
Q  10 aagaatatgacatgaaatatgggatcaaattggtgtttgtaatcatgcaacaaataaggcaacacaagtaacctatactgaaaacaattttacatgtacg 109  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41818760 aagaaaatgacatgaaatatgggatcaaattggtgtttgtaatcatgcaacaaataaggcaacacaagtaacctatactgaaaacaattttacatgtacg 41818661  T
Q  110 gatttcttttctttttt-gggtaacaagagaatcttagccca-------------------cattaaacaacaactggtcattttcatgtaccaatttat 189  Q
    ||||||||||||||||| ||||||||||||||||||||||||                   |||||||||||||||||||||||||||||||||||||||    
T  41818660 gatttcttttctttttttgggtaacaagagaatcttagcccaaaagacaaaattacataaacattaaacaacaactggtcattttcatgtaccaatttat 41818561  T
Q  190 ttttataatataaacttttggatattaacggcagaattttactcttttaaagctgagaggacaatttcctcaatttctcttctctatcgcgcaatatt 287  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41818560 ttttataatataaacttttggatattaacggcagaattttactcttttaaagctgagaggacaatttcctcaatttctcttctctatcgcgcaatatt 41818463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University